TkA02G105550 | RubberDandelionOmics

Gene overview

TkA02G105550

Reference: TK1151 Chr: Chr02 Coordinates: 27640814-27642807 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

792 bp · TkA02G105550|TK1151|cDNA

ATGAACGGACCCATGTGGTTTAATGGAGTATACCACTTCTTTTATCAACACAACCCTTTTAAACCGGTATTCGATGCACGCATGTATTGGGGACACTCCATATCATACGACATGGTAAATTGGACCCATCTAGACCACGCTTTTACTCCAACCGAGCCCTACGACATCAATGGCTGCTGGTCTGGCTCGGCCACCATCCTCCCTGAAAACAAGCTTGTTATGCTTTACACCGGAAGAGACTCTAAAGAACGTCAAGTCCA...

CDS

Download CDS FASTA

792 bp · TkA02G105550|TK1151|CDS

ATGAACGGACCCATGTGGTTTAATGGAGTATACCACTTCTTTTATCAACACAACCCTTTTAAACCGGTATTCGATGCACGCATGTATTGGGGACACTCCATATCATACGACATGGTAAATTGGACCCATCTAGACCACGCTTTTACTCCAACCGAGCCCTACGACATCAATGGCTGCTGGTCTGGCTCGGCCACCATCCTCCCTGAAAACAAGCTTGTTATGCTTTACACCGGAAGAGACTCTAAAGAACGTCAAGTCCA...

Protein

Download Protein FASTA

264 aa · TkA02G105550|TK1151|PROTEIN

MNGPMWFNGVYHFFYQHNPFKPVFDARMYWGHSISYDMVNWTHLDHAFTPTEPYDINGCWSGSATILPENKLVMLYTGRDSKERQVQNSAVPKDLNDPYLKEWVKNVDNPIINLPEGIAPDLFRDPSTAWLDEDGKWRIVVGSQKDKMGIVFLYHSSDFVTWTNTNAVDTSVVAPSNGVKHVLKVALQDDFRDYYVLGDYSHEKEHYSPENELTLMTSLSIDYGRFYASKSFFDPVKNRRIIMAWVHETDESIARAEIRG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G105550`
TK1151 ID	TkA02G105550
OH-1004 ID	LXL04_025958
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	89.000
Protein coverage (%)	TK1151 100.000 / OH-1004 51.241 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G105550

Location Chr02:27640814-27642807 (+)

Description Similar to CWINV3: Beta-fructofuranosidase, insoluble isoenzyme CWINV3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g55120`	6-fructan exohydrolase that can use phlein, levan, neokestose, levanbiose, 6-kestose, and 1-kestose as substrates.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2YZ01`	May play a role in sucrose partitioning during seed development.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025958 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005975 carbohydrate metabolic process Biological Process

GO:0009611 response to wounding Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0010494 cytoplasmic stress granule Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004564 beta-fructofuranosidase activity Molecular Function

GO:0033949 fructan beta-(2,6)-fructosidase activity Molecular Function

KEGG gene cross-reference

ag:CAD48404

ath:AT1G55120

ath:AT3G13790

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.696

Rank 1 · TkA02G105550 · TK1151

Nucleus0.243

Rank 2 · TkA02G105550 · TK1151

Endoplasmic reticulum0.085

Rank 3 · TkA02G105550 · TK1151

Peroxisome0.076

Rank 4 · TkA02G105550 · TK1151

Lysosome / Vacuole0.069

Rank 5 · TkA02G105550 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00251Glyco_hydro_32N2-263 aa

PF04616Glyco_hydro_4335-139 aa

PF04616Glyco_hydro_43141-169 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G105550	`PF00251`	Glyco_hydro_32N	2	263	4.4e-68	230.8
TkA02G105550	`PF04616`	Glyco_hydro_43	35	139	0.0024	18.0
TkA02G105550	`PF04616`	Glyco_hydro_43	141	169	0.0024	18.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q67XZ3`	Arabidopsis thaliana	sp\|Q67XZ3\|INV3_ARATH Beta-fructofuranosidase, insoluble isoenzyme CWINV3	47.300%	Swiss-Prot	Medium
`A2YZ01`	Oryza sativa subsp. indica	sp\|A2YZ01\|INV7_ORYSI Beta-fructofuranosidase, insoluble isoenzyme 7	44.700%	Swiss-Prot	Medium

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