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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G102490
Reference: TK1151 Chr: Chr02 Coordinates: 26804420-26805908 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

792 bp · TkA02G102490|TK1151|cDNA

ATGGTGACCGGATACTCAAACACTCAAGATTTAGCAACTGCAAGAAGTTATTTCGATCAAATGCCTGAGAAAAACATCGTTTCTTGGAATGCAATGTTATCTGGATACACCCAAAATGGATATGCAGAAGAAGCTATAAAACTGTTCAACAAGATGATTAATTCAAATATTCAACCTGATGAAGTTACAATGGTAAGTGTGATATCCGCATGTGGTCATCTAGGTGCATTGGAGTTAGGAAATTGGGCTTTAAATTTCAT...

CDS

Download CDS FASTA

792 bp · TkA02G102490|TK1151|CDS

ATGGTGACCGGATACTCAAACACTCAAGATTTAGCAACTGCAAGAAGTTATTTCGATCAAATGCCTGAGAAAAACATCGTTTCTTGGAATGCAATGTTATCTGGATACACCCAAAATGGATATGCAGAAGAAGCTATAAAACTGTTCAACAAGATGATTAATTCAAATATTCAACCTGATGAAGTTACAATGGTAAGTGTGATATCCGCATGTGGTCATCTAGGTGCATTGGAGTTAGGAAATTGGGCTTTAAATTTCAT...

Protein

Download Protein FASTA

263 aa · TkA02G102490|TK1151|PROTEIN

MVTGYSNTQDLATARSYFDQMPEKNIVSWNAMLSGYTQNGYAEEAIKLFNKMINSNIQPDEVTMVSVISACGHLGALELGNWALNFINENQINPDVDHYACMVDLLGRVGKLDEAKRLIEKMPMTPHAGVYGSLLHASRIRKRLDLGEFAANELFKIEPQNSGNYVLLSNMYASMGKWGDVERVRKDMELIGVKKSTGWSFVEYNGKLHKFIVGDKSHERWNDIYKLLMELRKKMRELGHNVDKGSVLRDVEDEEKEEMG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G102490
TK1151 IDTkA02G102490
OH-1004 IDLXL04_016790
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)73.900
Protein coverage (%)TK1151 97.719 / OH-1004 33.333
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G102490
LocationChr02:26804420-26805908 (+)
DescriptionSimilar to PCMP-A4: Pentatricopeptide repeat-containing protein At1g14470
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g02750 Pentatricopeptide repeat-containing protein At4g02750. No verified direct reference in this release
At2g13600 Pentatricopeptide repeat-containing protein At2g13600. No verified direct reference in this release
At3g49142 Putative pentatricopeptide repeat-containing protein At3g49142. No verified direct reference in this release
At3g26782 Pentatricopeptide repeat-containing protein At3g26782, mitochondrial. No verified direct reference in this release
At1g20230 Pentatricopeptide repeat-containing protein At1g20230. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_016790 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009409 response to cold Biological Process
GO:0009451 RNA modification Biological Process
GO:0009644 response to high light intensity Biological Process
GO:0010027 thylakoid membrane organization Biological Process
GO:0010207 photosystem II assembly Biological Process
GO:0010214 seed coat development Biological Process
GO:0010380 regulation of chlorophyll biosynthetic process Biological Process
GO:0048564 photosystem I assembly Biological Process
GO:0140547 acquisition of seed longevity Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G14470
ath:AT3G22690
ath:AT4G02750
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.627
Rank 1 · TkA02G102490 · TK1151
Plastid0.203
Rank 2 · TkA02G102490 · TK1151
Nucleus0.063
Rank 3 · TkA02G102490 · TK1151
Cytoplasm0.041
Rank 4 · TkA02G102490 · TK1151
Peroxisome0.008
Rank 5 · TkA02G102490 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01535PPR1-26 aa
PF13041PPR_21-26 aa
PF13812PPR_32-26 aa
PF23276TPR_242-26 aa
PF13181TPR_85-20 aa
PF13428TPR_146-20 aa
PF17177PPR_long9-75 aa
PF25064ARM_TT21_5th9-33 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G102490PF01535PPR1269.6e-2276.4
TkA02G102490PF13041PPR_21261.4e-2177.1
TkA02G102490PF13812PPR_32261.2e-0629.2
TkA02G102490PF23276TPR_242262e-0525.2
TkA02G102490PF13181TPR_85200.2912.1
TkA02G102490PF13428TPR_146200.008817.4
TkA02G102490PF17177PPR_long9750.01315.7
TkA02G102490PF25064ARM_TT21_5th9330.1213.5
TkA02G102490PF13041PPR_224721.4e-2177.1
TkA02G102490PF12854PPR_125521.5e-1454.1
TkA02G102490PF13812PPR_325721.2e-0629.2
TkA02G102490PF01535PPR27579.6e-2276.4
TkA02G102490PF13428TPR_1429530.008817.4
TkA02G102490PF29070MSC6_N301211.9e-0937.8
TkA02G102490PF23276TPR_2430692e-0525.2
TkA02G102490PF20431E_motif36571.3e-1970.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SY02Arabidopsis thalianasp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g0275043.800%Swiss-ProtMedium
Q9SIT7Arabidopsis thalianasp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g1360047.600%Swiss-ProtMedium
P0C899Arabidopsis thalianasp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g4914243.400%Swiss-ProtMedium
Q9LW32Arabidopsis thalianasp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782, mitochondrial42.900%Swiss-ProtMedium
Q9LNU6Arabidopsis thalianasp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g2023038.100%Swiss-ProtMedium

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