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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G101530
Reference: TK1151 Chr: Chr02 Coordinates: 26528311-26529771 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1275 bp · TkA02G101530|TK1151|cDNA

ATGAGCAGAGGCGGCACGATCAGAGAGGTTGAACGGAAAATCCTCAGCCACCTCCACGGCCGCCGTAGCCGGATCTATCTCACCCAAATCCATGCTCAAATCCTCCGCCACAACCTCCACCAGTCCAACCACATTCTCTCTCACTTCACCTCCGTTTGTGGCTCCCTCCGCAAAATGGACTACGCCAATCTCATCTTTCTGCAAACCCACCATCCCAACATCCTCCTCTACAATTCCATGATCAAAGGCTACTCGCTCTC...

CDS

Download CDS FASTA

1275 bp · TkA02G101530|TK1151|CDS

ATGAGCAGAGGCGGCACGATCAGAGAGGTTGAACGGAAAATCCTCAGCCACCTCCACGGCCGCCGTAGCCGGATCTATCTCACCCAAATCCATGCTCAAATCCTCCGCCACAACCTCCACCAGTCCAACCACATTCTCTCTCACTTCACCTCCGTTTGTGGCTCCCTCCGCAAAATGGACTACGCCAATCTCATCTTTCTGCAAACCCACCATCCCAACATCCTCCTCTACAATTCCATGATCAAAGGCTACTCGCTCTC...

Protein

Download Protein FASTA

424 aa · TkA02G101530|TK1151|PROTEIN

MSRGGTIREVERKILSHLHGRRSRIYLTQIHAQILRHNLHQSNHILSHFTSVCGSLRKMDYANLIFLQTHHPNILLYNSMIKGYSLSPPFHTSLNLFSTMKKHGIWPDEFTFAPVLKSCSNLSDVKFGQTVHSQIVSLGFHCFSGIRVGVVEMYTNCGLLKDAKKVFDEMRHRDAIIWNLMIHGYCKTGNIDMGYNLFKQMEEKNIVTWNTMLSSLSKTNRKFEAIKLFQEMRENGIEPDEATIVTMLPLCARLGEDKIG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G101530
TK1151 IDTkA02G101530
OH-1004 IDLXL04_016799
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)86.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G101530
LocationChr02:26528311-26529771 (-)
DescriptionSimilar to PCMP-E70: Pentatricopeptide repeat-containing protein At1g09190
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g09190 Pentatricopeptide repeat-containing protein At1g09190. No verified direct reference in this release
At2g20540 Pentatricopeptide repeat-containing protein At2g20540. No verified direct reference in this release
At5g56310 Pentatricopeptide repeat-containing protein At5g56310. No verified direct reference in this release
At4g21065 Pentatricopeptide repeat-containing protein At4g21065. No verified direct reference in this release
At3g29230 Pentatricopeptide repeat-containing protein At3g29230. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_016799 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0009733 response to auxin Biological Process
GO:0009735 response to cytokinin Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0009739 response to gibberellin Biological Process
GO:0016554 cytidine to uridine editing Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:1900865 chloroplast RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G09190
ath:AT2G20540
ath:AT5G08510
ath:AT5G56310
ath:AT5G66520
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.691
Rank 1 · TkA02G101530 · TK1151
Plastid0.126
Rank 2 · TkA02G101530 · TK1151
Nucleus0.050
Rank 3 · TkA02G101530 · TK1151
Cytoplasm0.032
Rank 4 · TkA02G101530 · TK1151
Cell membrane0.005
Rank 5 · TkA02G101530 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22330Rib_mS39_PPR16-40 aa
PF10602RPN724-51 aa
PF22330Rib_mS39_PPR57-83 aa
PF17177PPR_long64-140 aa
PF18768RNPP_C69-98 aa
PF12854PPR_170-84 aa
PF13041PPR_272-120 aa
PF13812PPR_372-120 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G101530PF22330Rib_mS39_PPR16400.0003621.1
TkA02G101530PF10602RPN724510.04714.1
TkA02G101530PF22330Rib_mS39_PPR57830.0003621.1
TkA02G101530PF17177PPR_long641408.5e-1348.9
TkA02G101530PF18768RNPP_C69980.3411.1
TkA02G101530PF12854PPR_170841.5e-36124.5
TkA02G101530PF13041PPR_2721201.1e-57192.6
TkA02G101530PF13812PPR_3721205.3e-2175.2
TkA02G101530PF01535PPR771059.6e-52170.4
TkA02G101530PF23276TPR_24771187.8e-0936.3
TkA02G101530PF29070MSC6_N781262.4e-0937.5
TkA02G101530PF19189Mtf2901050.0004420.8
TkA02G101530PF17593DUF5490961060.2512.1
TkA02G101530PF18026Exog_C971110.005317.4
TkA02G101530PF12854PPR_11041121.5e-36124.5
TkA02G101530PF14559TPR_191471740.005217.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O80488Arabidopsis thalianasp|O80488|PPR23_ARATH Pentatricopeptide repeat-containing protein At1g0919049.600%Swiss-ProtMedium
Q9SIL5Arabidopsis thalianasp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g2054034.000%Swiss-ProtMedium
Q9FMA1Arabidopsis thalianasp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g5631033.600%Swiss-ProtMedium
A8MQA3Arabidopsis thalianasp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g2106528.400%Swiss-ProtLow
Q9LS72Arabidopsis thalianasp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g2923032.700%Swiss-ProtMedium

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