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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G099600
Reference: TK1151 Chr: Chr02 Coordinates: 25975377-25979132 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1710 bp · TkA02G099600|TK1151|cDNA

ATAATATCGACATGACCCATAAATAAAGTTTACAAAAATGGGAGTTTAATACCAAAAAACTTCTTTAAAAGCTCTGATTATTAGAGATACCCTAAAGTTAAAGGGTTAGTCATGTGTAAGAAACTAAAAAAAAGGATGAAACTTTGTAAAATGAAAGTAGAGGGACCAAAATAGCACATTCTTTCGCCGTATGCTGTAGCTGTTAAACCCCTTTCTTTGACATCGGAAGAAAACTTGACGCCAGAAACATCGAGAAGAAA...

CDS

Download CDS FASTA

1329 bp · TkA02G099600|TK1151|CDS

ATGGCTAGGGTTCCGAGCAAGCATGGTCGCGATAATCCCCTGGATTTCGAGGGGTTTTTGAATAACTTGCAGGACTGGGAACTTTCACTCAAGGATAAAGACAAGAAGCTCAAATCACAATCTGACGTGGACAATATGATTGGAGTGGATAAAAGACAAAATGGTAAATCAACATTTTTAAATAATCCAAGTACTACAAAAGGAGAAGATTACCGTAAAAAATATGAAGCAGTTAGCCGAATATCAAGTGACTTCAATAC...

Protein

Download Protein FASTA

442 aa · TkA02G099600|TK1151|PROTEIN

MARVPSKHGRDNPLDFEGFLNNLQDWELSLKDKDKKLKSQSDVDNMIGVDKRQNGKSTFLNNPSTTKGEDYRKKYEAVSRISSDFNTDDSSIDANSEKELGNEFFKKRKYKEAIDCYSRSLALSPTAVAYANRAMAYLKLKKFKEAEVDCTEALNLDDRYIKAYSRRSTARKELGKLKDSKEDADFALRLEPNNQEIKKQYADAKALYDNELLKKVSSQMKASTEGVQKDEKSNSGQRSTPKISETATVSALAKDKKSNN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G099600
TK1151 IDTkA02G099600
OH-1004 IDLXL04_016832
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)92.100
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G099600
LocationChr02:25975377-25979132 (+)
DescriptionSimilar to Rpap3: RNA polymerase II-associated protein 3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_016832 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0050821 protein stabilization Biological Process
GO:0005829 cytosol Cellular Component
GO:0097255 R2TP complex Cellular Component
GO:0101031 protein folding chaperone complex Cellular Component
GO:1990062 RPAP3/R2TP/prefoldin-like complex Cellular Component
KEGG gene cross-reference
hsa:79657
rno:300189
xtr:549434
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.602
Rank 1 · TkA02G099600 · TK1151
Nucleus0.298
Rank 2 · TkA02G099600 · TK1151
Golgi apparatus0.084
Rank 3 · TkA02G099600 · TK1151
Cell membrane0.081
Rank 4 · TkA02G099600 · TK1151
Mitochondrion0.081
Rank 5 · TkA02G099600 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12968DUF385668-121 aa
PF25575TPR_BSK1_C71-161 aa
PF13424TPR_1275-123 aa
PF00515TPR_198-126 aa
PF07719TPR_299-126 aa
PF29407CFAP70_TPR_C99-196 aa
PF13432TPR_1699-147 aa
PF13181TPR_8100-125 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G099600PF12968DUF3856681210.2711.9
TkA02G099600PF25575TPR_BSK1_C711619.6e-0729.4
TkA02G099600PF13424TPR_12751238.2e-0729.8
TkA02G099600PF00515TPR_1981264.8e-1658.5
TkA02G099600PF07719TPR_2991261.6e-1247.2
TkA02G099600PF29407CFAP70_TPR_C991960.0001122.5
TkA02G099600PF13432TPR_16991470.0004521.3
TkA02G099600PF13181TPR_81001251.2e-0628.9
TkA02G099600PF13428TPR_141001300.005418.0
TkA02G099600PF13374TPR_101001220.03115.0
TkA02G099600PF25068ARM_TT21_4th1001577.97.4
TkA02G099600PF13414TPR_111011403.8e-0627.2
TkA02G099600PF12895ANAPC31011470.04314.8
TkA02G099600PF23914TPR_CcmH_CycH1011460.06613.8
TkA02G099600PF14559TPR_191061470.07514.1
TkA02G099600PF13371TPR_91061490.2312.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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