TkA02G099390 | RubberDandelionOmics

Gene overview

TkA02G099390

Reference: TK1151 Chr: Chr02 Coordinates: 25924275-25931818 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

720 bp · TkA02G099390|TK1151|cDNA

ATGCTATCTAATACCATCACAAGTAATCATGATACAAACGAAGAACTTATCAGATACGTTTTGTTACTTGAAGACAATATGGAGCTCGCTGAAAAAAAAATACTAAAACGAATTTCACACTCCGTGAACCGCTTGATCCACACAGCTAAGAAAAAACAAGACAAGAATCTCTTAAAGCTTCTTGAACAATCTACTGGATCCGAAGGTGTATCAAATTTTGATATCTTTCGAGTTGAACATCCACTTCCTTTTGAGCTTCC...

CDS

Download CDS FASTA

720 bp · TkA02G099390|TK1151|CDS

ATGCTATCTAATACCATCACAAGTAATCATGATACAAACGAAGAACTTATCAGATACGTTTTGTTACTTGAAGACAATATGGAGCTCGCTGAAAAAAAAATACTAAAACGAATTTCACACTCCGTGAACCGCTTGATCCACACAGCTAAGAAAAAACAAGACAAGAATCTCTTAAAGCTTCTTGAACAATCTACTGGATCCGAAGGTGTATCAAATTTTGATATCTTTCGAGTTGAACATCCACTTCCTTTTGAGCTTCC...

Protein

Download Protein FASTA

239 aa · TkA02G099390|TK1151|PROTEIN

MLSNTITSNHDTNEELIRYVLLLEDNMELAEKKILKRISHSVNRLIHTAKKKQDKNLLKLLEQSTGSEGVSNFDIFRVEHPLPFELPNNWSLPIATLICIAISLPNIGREITDNLFKSVGEGLSYTHLVDESLNNVWQYVNVQNAAMTLWDEVEDKCKWLGNTLEKSAYEGKTAKEILEWFSHKADDIMKEVYNTFQGEPLEKLPRKLIIASSMKRIAQSIICSYNISEITKKQLFVIL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G099390`
TK1151 ID	TkA02G099390
OH-1004 ID	LXL04_016839
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	73.400
Protein coverage (%)	TK1151 99.163 / OH-1004 31.551 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA02G099390`
Location	Chr02:25924275-25931818 (+)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_016839` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	No functional description available
KEGG gene cross-reference	No functional description available

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.434

Rank 1 · TkA02G099390 · TK1151

Nucleus0.340

Rank 2 · TkA02G099390 · TK1151

Mitochondrion0.166

Rank 3 · TkA02G099390 · TK1151

Cell membrane0.106

Rank 4 · TkA02G099390 · TK1151

Endoplasmic reticulum0.100

Rank 5 · TkA02G099390 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF27707UCP01294311-58 aa

PF20538DUF675324-61 aa

PF17979zf-CRD25-33 aa

PF13089PP_kinase_N26-63 aa

PF27707UCP012943135-197 aa

PF20538DUF6753138-183 aa

PF17979zf-CRD152-236 aa

PF13089PP_kinase_N164-207 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G099390	`PF27707`	UCP012943	11	58	2.0	8.9
TkA02G099390	`PF20538`	DUF6753	24	61	0.13	12.4
TkA02G099390	`PF17979`	zf-CRD	25	33	0.7	10.9
TkA02G099390	`PF13089`	PP_kinase_N	26	63	0.16	13.0
TkA02G099390	`PF27707`	UCP012943	135	197	2.0	8.9
TkA02G099390	`PF20538`	DUF6753	138	183	0.13	12.4
TkA02G099390	`PF17979`	zf-CRD	152	236	0.7	10.9
TkA02G099390	`PF13089`	PP_kinase_N	164	207	0.16	13.0
TkA02G099390	`PF18136`	DNApol_Exo	167	221	0.07	13.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser

Gene Card