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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G097930
Reference: TK1151 Chr: Chr02 Coordinates: 25617472-25622938 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2109 bp · TkA02G097930|TK1151|cDNA

GGAAATCTTAACATCGTAAAAAAGGATTATAATAAGCATTAACGTTTATAAGTTCTTATTAGATTTATTATTATAAAATAAAGAAACTAACCAAATCGGAAACAAATTGGAAACTTCATGTTTGCTTTCCGTCGCCATAAACAGTCATGGGTTCTTTCCTAAGTGCCTGCGTGTAATTATATGATCAATACACTGTATTTGATATTGAAATATCAACGATTGATTAAGATGATTAATTGATAAATGATAAGCCCACCTGA...

CDS

Download CDS FASTA

1467 bp · TkA02G097930|TK1151|CDS

CCTCACATAAACGATTATCACTTTTCAAAACAAAACGACTATCCGACTTTTGTCAATTCCAGATCAAATTTTCGTATTTCTTTTGCAATACTTCAATACTTTGGGGGACAAAAAACTAAATTAACGTTTTGTGGGGTGCAGCTCCGCAAATACAAGGGTTTCTTGAACGAAAGAAGATCAGAGAACGAGAGACCGCCACACCAACAGATGGGAACCGCCCAAGTCGAGAAGACTGAGCAAGAGCTTCGGAAAGAGATCGA...

Protein

Download Protein FASTA

488 aa · TkA02G097930|TK1151|PROTEIN

PHINDYHFSKQNDYPTFVNSRSNFRISFAILQYFGGQKTKLTFCGVQLRKYKGFLNERRSENERPPHQQMGTAQVEKTEQELRKEIEELHRQQWEITERLRDPRGIRRGGLTGSGPRNFAAGGPARQRGFVRPADRNDAEDQPAPKRRLSSTVVKIEEGEIVEDAVDTSKGDDNKKDSAMEVAGNAENQNNRKPSNWTRRDGTNRSFKMDSEVPPFENVPRVLPKDEDPSLVNRNKRMLGQLLGTLEKFRKEDVKLSGSE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G097930
TK1151 IDTkA02G097930
OH-1004 IDLXL04_016848
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.700
Protein coverage (%)TK1151 90.779 / OH-1004 88.508
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G097930
LocationChr02:25617472-25622938 (+)
DescriptionProtein of unknown function
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_016848 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000398 mRNA splicing, via spliceosome Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006397 mRNA processing Biological Process
GO:0007155 cell adhesion Biological Process
GO:0008380 RNA splicing Biological Process
GO:0048255 mRNA stabilization Biological Process
GO:0050684 regulation of mRNA processing Biological Process
GO:0098609 cell-cell adhesion Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005882 intermediate filament Cellular Component
KEGG gene cross-reference
hsa:5411
mmu:18949
pon:100443066
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.853
Rank 1 · TkA02G097930 · TK1151
Cytoplasm0.214
Rank 2 · TkA02G097930 · TK1151
Mitochondrion0.047
Rank 3 · TkA02G097930 · TK1151
Cell membrane0.027
Rank 4 · TkA02G097930 · TK1151
Endoplasmic reticulum0.014
Rank 5 · TkA02G097930 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02014Reeler20-77 aa
PF17675APG6_N49-101 aa
PF04696Pinin_SDK_memA67-98 aa
PF06758Olduvai137-168 aa
PF04696Pinin_SDK_memA232-359 aa
PF17675APG6_N252-301 aa
PF03154Atrophin-1258-310 aa
PF17675APG6_N333-395 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G097930PF02014Reeler20770.2512.2
TkA02G097930PF17675APG6_N491019.47.4
TkA02G097930PF04696Pinin_SDK_memA67981.9e-2796.6
TkA02G097930PF06758Olduvai1371680.06114.1
TkA02G097930PF04696Pinin_SDK_memA2323591.9e-2796.6
TkA02G097930PF17675APG6_N2523019.47.4
TkA02G097930PF03154Atrophin-12583107.45.3
TkA02G097930PF17675APG6_N3333959.47.4
TkA02G097930PF24978Death_Lrrd13463760.1313.2
TkA02G097930PF04696Pinin_SDK_memA3623791.9e-2796.6
TkA02G097930PF24978Death_Lrrd14094280.1313.2
TkA02G097930PF17675APG6_N4284289.47.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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