TkA02G092710 | RubberDandelionOmics

Gene overview

TkA02G092710

Reference: TK1151 Chr: Chr02 Coordinates: 24141868-24148013 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2632 bp · TkA02G092710|TK1151|cDNA

TTATAGTCATAAGAAGAAAGTATTAAACTTTCTGGACCAATTGTGCACATACTATGAATCAACTCTAGATGGTCAAAGTCAAAGTCAAAGCAGTCAAGCATTCCTGGATAAGATTTCTGAATTAGCCGATGCAAATGGAGTACAATCTAAAGGAATTATGTCAGCTATTTCTGAATTTTCTGTTGACAAATTTACACTTCATTTAAAGAAGACGGGTCAATTTCTAAACGGACAAATTGGGCTTGAAAAAGGCGAGAATG...

CDS

Download CDS FASTA

1119 bp · TkA02G092710|TK1151|CDS

ATGAGACTTGTCTTCAACCCAATGAGTTCCCTTGTTGATCTTCCACTCAAGAATTACTACAGATTTGTAACTCCAACAATGGATGACTTCAGCAACACTGATTTGACAGTACATGGTCCGAAAGCATTTTTTGCAAATATGCCACTGTCAAAAACCCTAACCATGAATCTTGATGTTCCTGAATCATGGCTAATTGAACCTGTCATTGCTATCCATGATCTTGATAATATATTGCTTGAGAACCTTGGTGACACAAGGAC...

Protein

Download Protein FASTA

372 aa · TkA02G092710|TK1151|PROTEIN

MRLVFNPMSSLVDLPLKNYYRFVTPTMDDFSNTDLTVHGPKAFFANMPLSKTLTMNLDVPESWLIEPVIAIHDLDNILLENLGDTRTLQAVFELEALVLTGHCSEKDREPPRGLQMILGTKKNPHLVDTLVMANLGYWQMKVSPGVWYLQLAPGRSSDLYLLQDGQEMRSTKRIIIDQLRGKPFHLGVVKKTGKEHDKLLVPSDEEDSSRKQGDQESWNSNILKWASSLIGSNVQSKKSGSNEVDNVSNGRKGKTINIFS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G092710`
TK1151 ID	TkA02G092710
OH-1004 ID	LXL04_016923
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	98.300
Protein coverage (%)	TK1151 93.548 / OH-1004 21.284 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G092710

Location Chr02:24141868-24148013 (-)

Description Similar to UGGT: UDP-glucose:glycoprotein glucosyltransferase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g71220`	Recognizes glycoproteins with minor folding defects.	Allele-specific suppression of a defective brassinosteroid receptor reveals a physiological role of UGGT in ER quality control.2007 · DOI: 10.1016/j.molcel.2007.05.015 Specific ER quality control components required for biogenesis of the plant innate immune receptor EFR.2009 · DOI: 10.1073/pnas.0905532106 Receptor quality control in the endoplasmic reticulum for plant innate immunity.2009 · DOI: 10.1038/emboj.2009.263

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016923 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006457 protein folding Biological Process

GO:0009101 glycoprotein biosynthetic process Biological Process

GO:0009306 protein secretion Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0046283 anthocyanin-containing compound metabolic process Biological Process

GO:0051084 'de novo' post-translational protein folding Biological Process

GO:1904380 endoplasmic reticulum mannose trimming Biological Process

GO:0005635 nuclear envelope Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

KEGG gene cross-reference

ath:AT1G71220

dme:Dmel_CG6850

hsa:56886

mmu:320011

rno:171129

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.541

Rank 1 · TkA02G092710 · TK1151

Endoplasmic reticulum0.360

Rank 2 · TkA02G092710 · TK1151

Cytoplasm0.119

Rank 3 · TkA02G092710 · TK1151

Extracellular0.070

Rank 4 · TkA02G092710 · TK1151

Cell membrane0.066

Rank 5 · TkA02G092710 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06427UDP-g_GGTase101-200 aa

PF06427UDP-g_GGTase246-270 aa

PF18404Glyco_transf_24256-352 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G092710	`PF06427`	UDP-g_GGTase	101	200	5.9e-28	97.8
TkA02G092710	`PF06427`	UDP-g_GGTase	246	270	5.9e-28	97.8
TkA02G092710	`PF18404`	Glyco_transf_24	256	352	8.4e-42	144.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q0WL80`	Arabidopsis thaliana	sp\|Q0WL80\|UGGG_ARATH UDP-glucose:glycoprotein glucosyltransferase	76.400%	Swiss-Prot	High

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