TkA02G071220 | RubberDandelionOmics

Gene overview

TkA02G071220

Reference: TK1151 Chr: Chr02 Coordinates: 18481100-18481957 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

450 bp · TkA02G071220|TK1151|cDNA

TACAACCTCTATGCACCGATTTGCTTGAACACTGGTCTAAAGAATGCTTCTGGCACTGGTTCCATAAACGTTTTTGATCCATGCTGGCAGTATATCCTTGAAACATATCTTAATGACACTGTAGTGCAAAAGGCACTTCATGTGAAACCAACATCATGGGATTTATGCAGTAATGTTATCAGAAGCTGGAACGATAGTGCAGTTACAATCCTCCCCACAATTAAGTATCTAATCGAAAATGGCCAACGGATTTGGGTATT...

CDS

Download CDS FASTA

450 bp · TkA02G071220|TK1151|CDS

TACAACCTCTATGCACCGATTTGCTTGAACACTGGTCTAAAGAATGCTTCTGGCACTGGTTCCATAAACGTTTTTGATCCATGCTGGCAGTATATCCTTGAAACATATCTTAATGACACTGTAGTGCAAAAGGCACTTCATGTGAAACCAACATCATGGGATTTATGCAGTAATGTTATCAGAAGCTGGAACGATAGTGCAGTTACAATCCTCCCCACAATTAAGTATCTAATCGAAAATGGCCAACGGATTTGGGTATT...

Protein

Download Protein FASTA

150 aa · TkA02G071220|TK1151|PROTEIN

YNLYAPICLNTGLKNASGTGSINVFDPCWQYILETYLNDTVVQKALHVKPTSWDLCSNVIRSWNDSAVTILPTIKYLIENGQRIWVFSGDTDARVPITASRYSINTLNLPIETAWRPWYLNKEVGGYLEAYKGLLLITVRGAGHTVPSYQ

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G071220`
TK1151 ID	TkA02G071220
OH-1004 ID	LXL04_017159
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	79.300
Protein coverage (%)	TK1151 100.000 / OH-1004 26.327 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G071220

Location Chr02:18481100-18481957 (+)

Description Similar to SCP1: Serine carboxypeptidase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g63470`	Probable carboxypeptidase.	No verified direct reference in this release
`At4g30610`	Active serine carboxypeptidase with broad substrate preference, including basic and hydrophilic groups.	BRS1, a serine carboxypeptidase, regulates BRI1 signaling in Arabidopsis thaliana.2001 · DOI: 10.1073/pnas.091065998 Arabidopsis BRS1 is a secreted and active serine carboxypeptidase.2005 · DOI: 10.1074/jbc.m503299200
`At3g02110`	Probable carboxypeptidase.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017159 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0009610 response to symbiotic fungus Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0036377 arbuscular mycorrhizal association Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005615 extracellular space Cellular Component

GO:0005773 vacuole Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004185 serine-type carboxypeptidase activity Molecular Function

KEGG gene cross-reference

ath:AT2G24010

ath:AT3G63470

ath:AT4G30610

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.387

Rank 1 · TkA02G071220 · TK1151

Lysosome / Vacuole0.325

Rank 2 · TkA02G071220 · TK1151

Cytoplasm0.120

Rank 3 · TkA02G071220 · TK1151

Endoplasmic reticulum0.074

Rank 4 · TkA02G071220 · TK1151

Cell membrane0.032

Rank 5 · TkA02G071220 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00450Peptidase_S101-150 aa

PF09001DUF189017-92 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G071220	`PF00450`	Peptidase_S10	1	150	6.5e-33	115.4
TkA02G071220	`PF09001`	DUF1890	17	92	0.21	12.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q0WRX3`	Arabidopsis thaliana	sp\|Q0WRX3\|SCP40_ARATH Serine carboxypeptidase-like 40	53.200%	Swiss-Prot	High
`Q9M099`	Arabidopsis thaliana	sp\|Q9M099\|SCP24_ARATH Serine carboxypeptidase 24	43.700%	Swiss-Prot	Medium
`Q8L9Y0`	Arabidopsis thaliana	sp\|Q8L9Y0\|SCP25_ARATH Serine carboxypeptidase-like 25	42.800%	Swiss-Prot	Medium

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