Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1454 bp · TkA02G071140|TK1151|cDNA
AAGCCAACTTGAAACACCTTCAAAACAAATTATCAGTCTTCAAGTAATTATACACGCCTTTCAACCCAATGGCTCTTTCCCACCTCAATTCAATCCTCTTGCTTCTTGTTTCACTCACAGTAGCATCAATCATTGGGAACAACATCGCAGAGGCGCGTAAGCTTTTGGAGGTCCCTCAGCTTTCGAATCCTACACTTCCGGAAATCACGAAGCCCACACTTCCTGACATGCCAAAGCCCCTAGTTCGTGAGATCCCAAAG...
1152 bp · TkA02G071140|TK1151|CDS
ATGGCTCTTTCCCACCTCAATTCAATCCTCTTGCTTCTTGTTTCACTCACAGTAGCATCAATCATTGGGAACAACATCGCAGAGGCGCGTAAGCTTTTGGAGGTCCCTCAGCTTTCGAATCCTACACTTCCGGAAATCACGAAGCCCACACTTCCTGACATGCCAAAGCCCCTAGTTCGTGAGATCCCAAAGCCCGTAGTTCCTGAGATACCAAAGCCCGTAACTCCCGAGGTCTCAAAGCCCGTAGTTCCCGAGGTCCC...
Protein
Download Protein FASTA383 aa · TkA02G071140|TK1151|PROTEIN
MALSHLNSILLLLVSLTVASIIGNNIAEARKLLEVPQLSNPTLPEITKPTLPDMPKPLVREIPKPVVPEIPKPVTPEVSKPVVPEVPKPVIPEIPKPVLPEVPKPNLHEMPKPLAPEVPKPVIPDIPKPIVPEIPKPKLPEMPKPVTPEVPKPVIPDIPKPIVPEIPKPKLPEMPKPVTPEVPKPVVPEVTKPVIPEIPKHVLPEVPKTNLPEMPKPLIPEIPKPVTPDFPKPVVPEIPKPKLPEMPKSVIPEVRKPVVP...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA02G071140 |
|---|---|
| TK1151 ID | TkA02G071140 |
| OH-1004 ID | LXL04_017161 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 11.227 / OH-1004 10.165Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA02G071140 |
|---|---|
| Location | Chr02:18461595-18463168 (-) |
| Description | Similar to PELPK1: Protein PELPK1 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0009791 post-embryonic development Biological Process GO:0010030 positive regulation of seed germination Biological Process GO:0043484 regulation of RNA splicing Biological Process GO:2000028 regulation of photoperiodism, flowering Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009505 plant-type cell wall Cellular Component GO:0016607 nuclear speck Cellular Component GO:0070161 anchoring junction Cellular Component |
| KEGG gene cross-reference | ath:AT5G09530 hsa:57716 mmu:19153 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF02389Cornifin35-137 aaPF02389Cornifin125-226 aaPF02389Cornifin217-312 aaPF02389Cornifin294-373 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA02G071140 | PF02389 | Cornifin | 35 | 137 | 4.9e-18 | 66.3 |
| TkA02G071140 | PF02389 | Cornifin | 125 | 226 | 4.9e-18 | 66.3 |
| TkA02G071140 | PF02389 | Cornifin | 217 | 312 | 4.9e-18 | 66.3 |
| TkA02G071140 | PF02389 | Cornifin | 294 | 373 | 4.9e-18 | 66.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.