Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1074 bp · TkA02G054900|TK1151|cDNA
ATGATGATAGGGTATGAAAATGAGGAAGTACAAGGCTTACTCAAAGAAATAGAAGGGATGGCTGCAAATACTTGGCGAGAATTTAGTATAGAATTGAGGGATAAGATGTTAAAGATTATTGAAGAACTCTGTGACATCATATATAGATCGAGTGTAGAAGGAGAAGAAGTTTTTGTGGGATTTGATGACGATGTAGAAGCACTATTGGATCAACTTACTCAAACGTCAATAAAGCAGCTCCAGGTTATATCAATTGCAGG...
1074 bp · TkA02G054900|TK1151|CDS
ATGATGATAGGGTATGAAAATGAGGAAGTACAAGGCTTACTCAAAGAAATAGAAGGGATGGCTGCAAATACTTGGCGAGAATTTAGTATAGAATTGAGGGATAAGATGTTAAAGATTATTGAAGAACTCTGTGACATCATATATAGATCGAGTGTAGAAGGAGAAGAAGTTTTTGTGGGATTTGATGACGATGTAGAAGCACTATTGGATCAACTTACTCAAACGTCAATAAAGCAGCTCCAGGTTATATCAATTGCAGG...
Protein
Download Protein FASTA357 aa · TkA02G054900|TK1151|PROTEIN
MMIGYENEEVQGLLKEIEGMAANTWREFSIELRDKMLKIIEELCDIIYRSSVEGEEVFVGFDDDVEALLDQLTQTSIKQLQVISIAGMDGIGKTTLARKLYNDALIQYHFDIRAWTCVSQTYIKRDLLIGILSSFIYDLKEEIYKMSDEQLGEKLYRLLKGQKYLVVLDDIWDCKAWNDLQIYFPDDKVGSQVLLTSRDIDVSLHVRAARPAHILRLRTANESWNIFQKKVFRTGIFFSHLNEVGRKIAKKCEGLPLAIV...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA02G054900 |
|---|---|
| TK1151 ID | TkA02G054900 |
| OH-1004 ID | LXL04_013353 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 74.700 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 43.462Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA02G054900 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:14346151-14347224 (-) | |||||||||
| Description | Similar to R1B-16: Putative late blight resistance protein homolog R1B-16 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009626 plant-type hypersensitive response Biological Process GO:0051607 defense response to virus Biological Process GO:0005737 cytoplasm Cellular Component GO:0016020 membrane Cellular Component GO:0005524 ATP binding Molecular Function GO:0043531 ADP binding Molecular Function GO:0046872 metal ion binding Molecular Function | |||||||||
| KEGG gene cross-reference | No functional description available |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF25201nSTAND64-35 aaPF13479AAA_2426-56 aaPF13191AAA_1658-160 aaPF00931NB-ARC62-233 aaPF02367TsaE65-106 aaPF25201nSTAND669-114 aaPF06745ATPase69-99 aaPF00005ABC_tran75-102 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA02G054900 | PF25201 | nSTAND6 | 4 | 35 | 0.0063 | 17.3 |
| TkA02G054900 | PF13479 | AAA_24 | 26 | 56 | 0.0042 | 17.5 |
| TkA02G054900 | PF13191 | AAA_16 | 58 | 160 | 1.8e-05 | 26.1 |
| TkA02G054900 | PF00931 | NB-ARC | 62 | 233 | 9.1e-42 | 143.3 |
| TkA02G054900 | PF02367 | TsaE | 65 | 106 | 0.15 | 12.8 |
| TkA02G054900 | PF25201 | nSTAND6 | 69 | 114 | 0.0063 | 17.3 |
| TkA02G054900 | PF06745 | ATPase | 69 | 99 | 0.14 | 12.2 |
| TkA02G054900 | PF00005 | ABC_tran | 75 | 102 | 0.16 | 13.3 |
| TkA02G054900 | PF20720 | nSTAND3 | 77 | 177 | 0.00013 | 22.4 |
| TkA02G054900 | PF24883 | NPHP3_N | 80 | 149 | 0.049 | 14.5 |
| TkA02G054900 | PF13173 | AAA_14 | 81 | 196 | 6.4e-05 | 23.7 |
| TkA02G054900 | PF13401 | AAA_22 | 81 | 171 | 0.00054 | 21.0 |
| TkA02G054900 | PF05729 | NACHT | 82 | 196 | 0.0019 | 18.7 |
| TkA02G054900 | PF13479 | AAA_24 | 82 | 105 | 0.0042 | 17.5 |
| TkA02G054900 | PF13238 | AAA_18 | 83 | 171 | 0.031 | 15.5 |
| TkA02G054900 | PF23559 | WHD_DRP | 317 | 356 | 3.1e-09 | 37.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.