RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G046000
Reference: TK1151 Chr: Chr02 Coordinates: 11844908-11851082 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2381 bp · TkA02G046000|TK1151|cDNA

AAACAAAGAAACACTCACGCTCCCCTCACTTATTAACCAATGGCATCTCCTCACATGTCCCATAAAGCATTCCCAATTCTAGCTTTCTTTCATATTGTCCAATGGCATACTCACAGAGCCTCACAAGTACTTGCTATCATCATGTTCACCACCAGAACAATCTTCCACCAAAACTTTTCTCAAAGACTTGCAATCTAATCAATTTCAAGAAAATTTCAACAACATCTTTAACAAGTAGGAGCAACAAAACAAGAAGTAGC...

CDS

Download CDS FASTA

1518 bp · TkA02G046000|TK1151|CDS

ATGGCATACTCACAGAGCCTCACAAGTACTTGCTATCATCATGTTCACCACCAGAACAATCTTCCACCAAAACTTTTCTCAAAGACTTGCAATCTAATCAATTTCAAGAAAATTTCAACAACATCTTTAACAAGTAGGAGCAACAAAACAAGAAGTAGCTATGAAGTAAAAGCAAAAACCAACACTAATACAGACGTTAAAAAACAAACAGACGAAGGTGTACAGAAGAAGGAAAGAAGTGTTCGGATTCTGATTGCTGG...

Protein

Download Protein FASTA

505 aa · TkA02G046000|TK1151|PROTEIN

MAYSQSLTSTCYHHVHHQNNLPPKLFSKTCNLINFKKISTTSLTSRSNKTRSSYEVKAKTNTNTDVKKQTDEGVQKKERSVRILIAGGGIGGLVLALAAKERGFDVMVFEKNLSAVRGEGRHRGPIQLMSSALGVLIGIHKDVAKQVMNAGCITGDRTNGLVDGVSGNWLAEFDLLAPATKKGLPVTLVISRTALQEILLKAVGEDIVFNNSKVVDISQDPHKVVATLDDGRQFEGDILVGADGIWSEVRKKLFGAQEAN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G046000
TK1151 IDTkA02G046000
OH-1004 IDLXL04_017381
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)74.500
Protein coverage (%)TK1151 62.970 / OH-1004 96.942
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G046000
LocationChr02:11844908-11851082 (-)
DescriptionSimilar to ZEP: Zeaxanthin epoxidase, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene IDPossible functionPapers / DOI
Os04g0448900 Zeaxanthin epoxidase that plays an important role in the xanthophyll cycle and abscisic acid (ABA) biosynthesis. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_017381 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009414 response to water deprivation Biological Process
GO:0009688 abscisic acid biosynthetic process Biological Process
GO:0016123 xanthophyll biosynthetic process Biological Process
GO:0050891 multicellular organismal-level water homeostasis Biological Process
GO:0009507 chloroplast Cellular Component
GO:0009535 chloroplast thylakoid membrane Cellular Component
GO:0016020 membrane Cellular Component
GO:0031969 chloroplast membrane Cellular Component
GO:0052662 zeaxanthin epoxidase activity Molecular Function
GO:0071949 FAD binding Molecular Function
KEGG gene cross-reference
dosa:Os04g0448900
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.968
Rank 1 · TkA02G046000 · TK1151
Mitochondrion0.042
Rank 2 · TkA02G046000 · TK1151
Cytoplasm0.023
Rank 3 · TkA02G046000 · TK1151
Nucleus0.019
Rank 4 · TkA02G046000 · TK1151
Peroxisome0.018
Rank 5 · TkA02G046000 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05185PRMT572-116 aa
PF07992Pyr_redox_274-112 aa
PF01494FAD_binding_381-419 aa
PF01266DAO82-113 aa
PF03486HI0933_like82-114 aa
PF00890FAD_binding_283-112 aa
PF05834Lycopene_cycl83-111 aa
PF21088MS_channel_1st83-100 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G046000PF05185PRMT5721160.1312.8
TkA02G046000PF07992Pyr_redox_2741120.0003520.8
TkA02G046000PF01494FAD_binding_3814196.4e-1865.8
TkA02G046000PF01266DAO821132.4e-0524.8
TkA02G046000PF03486HI0933_like821140.07813.2
TkA02G046000PF00890FAD_binding_2831120.0008819.3
TkA02G046000PF05834Lycopene_cycl831110.0009519.1
TkA02G046000PF21088MS_channel_1st831005.47.8
TkA02G046000PF13450NAD_binding_8851122.6e-0525.1
TkA02G046000PF13454NAD_binding_9851130.2312.1
TkA02G046000PF01593Amino_oxidase901110.2211.5
TkA02G046000PF05834Lycopene_cycl1892590.0009519.1
TkA02G046000PF13454NAD_binding_91962420.2312.1
TkA02G046000PF07992Pyr_redox_22072450.0003520.8
TkA02G046000PF01266DAO2082532.4e-0524.8
TkA02G046000PF03486HI0933_like2092440.07813.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q0JCU7Oryza sativa subsp. japonicasp|Q0JCU7|ZEP_ORYSJ Zeaxanthin epoxidase, chloroplastic53.700%Swiss-ProtHigh

JBrowse

View in Genome Browser