TkA02G037570 | RubberDandelionOmics

Gene overview

TkA02G037570

Reference: TK1151 Chr: Chr02 Coordinates: 9463979-9467781 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2666 bp · TkA02G037570|TK1151|cDNA

CCACTTCCTTCCAGTAAAACTGTAAAAACAGCTAAATAACAACTACAGTAAAATCAGTATTCCCACTTGCACCGACGGCCCAAACCACAAACTTTTTACCCAAACTTACCTATCTTTGCCACGTGGCATGTTCTTATTTCATAAGGACACTTTTCTGGCCCCACCACGCCTCTATCCTCAACCGAAGCCCTCATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATCGCCGTCGTTCAGCCTGGCGATATTTTTTC...

CDS

Download CDS FASTA

1884 bp · TkA02G037570|TK1151|CDS

ATGTCTGGACCACTCGATCGATTTGCGAGGCCTTGCTTTGAGGGGTCATCAGGCAATGATGAAAGATCAGACAGAAGAGAAGAAAGAGCAGAGAGAAGAGAACGAAGATCTGATTTTGAAAACTCTGAAGATGAAAGGAGGACAAGAATCAGCTCTTTGAAAAAGAAAGCACTTAACGCATCTACCAAATTCAAACATTCTCTCAAGAAAAAAAGCAGTAGAAGAAAGAGCGACTGTCGAGTCAGTTCTGTTTCCATTGA...

Protein

Download Protein FASTA

627 aa · TkA02G037570|TK1151|PROTEIN

MSGPLDRFARPCFEGSSGNDERSDRREERAERRERRSDFENSEDERRTRISSLKKKALNASTKFKHSLKKKSSRRKSDCRVSSVSIEDIRDAEELRAVDSFRQSLVLDELLPQKLDDYHMMLRFLKARKFDIEKAKHMWADMIQWRKEFGTDTIIEEFEFKELDDVLKYYPHGNHGVDKEGRPVYIERLGKVDPNKLMQVTSMDRYIKYHVREFEKSFAYKFPACSIAAKRHIDSSTTILDVQGVGLKNFTKSARELIMR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G037570`
TK1151 ID	TkA02G037570
OH-1004 ID	LXL04_001725
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	77.500
Protein coverage (%)	TK1151 99.681 / OH-1004 92.251 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G037570

Location Chr02:9463979-9467781 (+)

Description Similar to SFH8: Phosphatidylinositol/phosphatidylcholine transfer protein SFH8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g39170`	Required for transport of secretory proteins from the Golgi complex.	No verified direct reference in this release
`At2g21520`	Required for transport of secretory proteins from the Golgi complex.	No verified direct reference in this release
`At1g75370`	Required for transport of secretory proteins from the Golgi complex.	No verified direct reference in this release
`At1g19650`	Required for transport of secretory proteins from the Golgi complex.	No verified direct reference in this release
`At4g34580`	Required for transport of secretory proteins from the Golgi complex (By similarity).	The Arabidopsis COW1 gene encodes a phosphatidylinositol transfer protein essential for root hair tip growth.2004 · DOI: 10.1111/j.1365-313x.2004.02245.x OsSNDP1, a Sec14-nodulin domain-containing protein, plays a critical role in root hair elongation in rice.2013 · DOI: 10.1007/s11103-013-0033-4 The COW1 locus of arabidopsis acts after RHD2, and in parallel with RHD3 and TIP1, to determine the shape, rate of elongation, and number of root hairs produced from each site of hair formation.1997 · DOI: 10.1104/pp.115.3.981

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001725 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006892 post-Golgi vesicle-mediated transport Biological Process

GO:0009908 flower development Biological Process

GO:0015031 protein transport Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0008526 phosphatidylinositol transfer activity Molecular Function

KEGG gene cross-reference

ath:AT1G19650

ath:AT1G75370

ath:AT2G21520

ath:AT2G21540

ath:AT4G39170

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.401

Rank 1 · TkA02G037570 · TK1151

Cytoplasm0.229

Rank 2 · TkA02G037570 · TK1151

Nucleus0.174

Rank 3 · TkA02G037570 · TK1151

Plastid0.133

Rank 4 · TkA02G037570 · TK1151

Endoplasmic reticulum0.110

Rank 5 · TkA02G037570 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28528UBA_Pinta96-147 aa

PF03765CRAL_TRIO_N119-141 aa

PF00650CRAL_TRIO169-330 aa

PF13716CRAL_TRIO_2202-332 aa

PF13716CRAL_TRIO_2497-515 aa

PF03765CRAL_TRIO_N604-620 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G037570	`PF28528`	UBA_Pinta	96	147	8.8e-05	23.4
TkA02G037570	`PF03765`	CRAL_TRIO_N	119	141	3.7e-06	27.7
TkA02G037570	`PF00650`	CRAL_TRIO	169	330	4.4e-31	108.5
TkA02G037570	`PF13716`	CRAL_TRIO_2	202	332	0.00015	22.8
TkA02G037570	`PF13716`	CRAL_TRIO_2	497	515	0.00015	22.8
TkA02G037570	`PF03765`	CRAL_TRIO_N	604	620	3.7e-06	27.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4JVA6`	Arabidopsis thaliana	sp\|F4JVA6\|SFH6_ARATH Phosphatidylinositol/phosphatidylcholine transfer protein SFH6	71.600%	Swiss-Prot	High
`F4IHJ0`	Arabidopsis thaliana	sp\|F4IHJ0\|SFH8_ARATH Phosphatidylinositol/phosphatidylcholine transfer protein SFH8	68.300%	Swiss-Prot	High
`Q8GXC6`	Arabidopsis thaliana	sp\|Q8GXC6\|SFH5_ARATH Phosphatidylinositol/phosphatidylcholine transfer protein SFH5	58.500%	Swiss-Prot	High
`F4HP88`	Arabidopsis thaliana	sp\|F4HP88\|SFH4_ARATH Phosphatidylinositol/phosphatidylcholine transfer protein SFH4	57.200%	Swiss-Prot	High
`F4JLE5`	Arabidopsis thaliana	sp\|F4JLE5\|SFH1_ARATH Phosphatidylinositol/phosphatidylcholine transfer protein SFH1	52.200%	Swiss-Prot	High

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