TkA02G036230 | RubberDandelionOmics

Gene overview

TkA02G036230

Reference: TK1151 Chr: Chr02 Coordinates: 9024809-9032253 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2820 bp · TkA02G036230|TK1151|cDNA

ATGTCTTCTTCAGGTTCAGCGTTAAACCTTAAAAAGTATCTAATTCCATTGGAGGAGATCACCCATGCCACCGAAAACTTCAGTCCGCAAAGATGTATTGGAGAAGGTGGATTTGGCAGGGTCTACAAAGGACAACTCTCTGAACGATGGGAAAACAGAACAGTTGCTATCAAACGCCTAAATCAGACTACCTACCAAGGAAAGAACGAGTTCCGCCACGAGCTTGAAATGATCTCCAAATTCCACCATAAAAATATCAT...

CDS

Download CDS FASTA

2820 bp · TkA02G036230|TK1151|CDS

ATGTCTTCTTCAGGTTCAGCGTTAAACCTTAAAAAGTATCTAATTCCATTGGAGGAGATCACCCATGCCACCGAAAACTTCAGTCCGCAAAGATGTATTGGAGAAGGTGGATTTGGCAGGGTCTACAAAGGACAACTCTCTGAACGATGGGAAAACAGAACAGTTGCTATCAAACGCCTAAATCAGACTACCTACCAAGGAAAGAACGAGTTCCGCCACGAGCTTGAAATGATCTCCAAATTCCACCATAAAAATATCAT...

Protein

Download Protein FASTA

939 aa · TkA02G036230|TK1151|PROTEIN

MSSSGSALNLKKYLIPLEEITHATENFSPQRCIGEGGFGRVYKGQLSERWENRTVAIKRLNQTTYQGKNEFRHELEMISKFHHKNIIAFIGYCDEGSEMIIVYEYAVQGSLDHHLEDPNKRRRITWIRRLRICIGVARGLDYLHSGLGEENRVIHRDMKSANILLDDKFVAKVCDFGLSKLGPRNKKNTHVSTKVAGTPYYLDPTYHESGILRKESDVYSFGVVLYEMLSGMLVYRKQIIDNEEMAHSIIHFVRRFHDHK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G036230`
TK1151 ID	TkA02G036230
OH-1004 ID	LXL04_017530
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	63.100
Protein coverage (%)	TK1151 63.365 / OH-1004 87.591 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G036230

Location Chr02:9024809-9032253 (+)

Description Similar to HERK1: Receptor-like protein kinase HERK 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g39000`	Putative receptor-like protein kinase At5g39000.	No verified direct reference in this release
`At5g38990`	Probable receptor-like protein kinase At5g38990.	No verified direct reference in this release
`At2g39360`	Probable receptor-like protein kinase At2g39360.	No verified direct reference in this release
`At5g59700`	Probable receptor-like protein kinase At5g59700.	No verified direct reference in this release
`At3g46290`	Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner.	Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana.2009 · DOI: 10.1073/pnas.0812346106

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017530 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009741 response to brassinosteroid Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0010038 response to metal ion Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0010483 pollen tube reception Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009536 plastid Cellular Component

GO:0043680 filiform apparatus Cellular Component

GO:0099503 secretory vesicle Cellular Component

KEGG gene cross-reference

ath:AT2G39360

ath:AT3G46290

ath:AT5G38990

ath:AT5G39000

ath:AT5G59700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.533

Rank 1 · TkA02G036230 · TK1151

Nucleus0.360

Rank 2 · TkA02G036230 · TK1151

Cell membrane0.197

Rank 3 · TkA02G036230 · TK1151

Endoplasmic reticulum0.071

Rank 4 · TkA02G036230 · TK1151

Golgi apparatus0.048

Rank 5 · TkA02G036230 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714PK_Tyr_Ser-Thr30-303 aa

PF00069Pkinase30-304 aa

PF01636APH141-184 aa

PF01636APH215-262 aa

PF12776Myb_DNA-bind_3300-345 aa

PF12776Myb_DNA-bind_3472-499 aa

PF01843DIL516-596 aa

PF12776Myb_DNA-bind_3717-817 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G036230	`PF07714`	PK_Tyr_Ser-Thr	30	303	2.4e-47	162.2
TkA02G036230	`PF00069`	Pkinase	30	304	9.2e-47	160.4
TkA02G036230	`PF01636`	APH	141	184	0.013	16.0
TkA02G036230	`PF01636`	APH	215	262	0.013	16.0
TkA02G036230	`PF12776`	Myb_DNA-bind_3	300	345	7.4e-09	37.2
TkA02G036230	`PF12776`	Myb_DNA-bind_3	472	499	7.4e-09	37.2
TkA02G036230	`PF01843`	DIL	516	596	1e-11	45.6
TkA02G036230	`PF12776`	Myb_DNA-bind_3	717	817	7.4e-09	37.2
TkA02G036230	`PF13339`	AATF-Che1	809	835	3.1	9.1
TkA02G036230	`PF13339`	AATF-Che1	854	906	3.1	9.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FID8`	Arabidopsis thaliana	sp\|Q9FID8\|Y5900_ARATH Putative receptor-like protein kinase At5g39000	45.200%	Swiss-Prot	Low
`Q9FID9`	Arabidopsis thaliana	sp\|Q9FID9\|Y5389_ARATH Probable receptor-like protein kinase At5g38990	45.500%	Swiss-Prot	Low
`O80623`	Arabidopsis thaliana	sp\|O80623\|Y2393_ARATH Probable receptor-like protein kinase At2g39360	43.800%	Swiss-Prot	Low
`Q9FN92`	Arabidopsis thaliana	sp\|Q9FN92\|Y5597_ARATH Probable receptor-like protein kinase At5g59700	42.900%	Swiss-Prot	Low
`Q9LX66`	Arabidopsis thaliana	sp\|Q9LX66\|HERK_ARATH Receptor-like protein kinase HERK 1	43.600%	Swiss-Prot	Low

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