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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G035840
Reference: TK1151 Chr: Chr02 Coordinates: 8929957-8933714 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2506 bp · TkA02G035840|TK1151|cDNA

AAAAACCTTGTCGTTACGTCGTCGTATTAACGAAGACGGCTGTATCAGCTCGGCTCCACTTGCTTTCTCTCTTTCTCCATCTCTCGTTTTCTTCTCCATCTTCCTCTGTACCATCGTATACATACATATGTATGTATGTATCATGGACTGCCCTCGCCGTGGCCACACACACTCTTCTCTATCTTCTTCCCCGTACGGCCGTCCACTGTAACGAATAATATCGTGCGGCTCTAGTTTCTTGTCTTTTCTTCCTCCTATAG...

CDS

Download CDS FASTA

1557 bp · TkA02G035840|TK1151|CDS

ATGAGCTTAAAGAAACCTGATACTCCATCTTTCCCATTTTTCAAACGCGGTCAAGAAAGCGTGAGAAATTTGATACCGAATGAAGAACTGCAAGCATTAGGACCTCAATTTTCTCACAAGAAACCGTCAACAGATTTGAATATAGGTTCTTCATCAAAAGAATGCCATTTTCAAACAGAAGAAGTATCACAGGTTCCTTCAGAACAAGTGAAATATCACATGTTTTTTGGTGAAACTCACACAACAACTCACCTACCAAA...

Protein

Download Protein FASTA

518 aa · TkA02G035840|TK1151|PROTEIN

MSLKKPDTPSFPFFKRGQESVRNLIPNEELQALGPQFSHKKPSTDLNIGSSSKECHFQTEEVSQVPSEQVKYHMFFGETHTTTHLPKTKSVAMEQEHKMPSFFRQDNVTLLKNNHPSASTNSSPSLIEEQYKRMQKHIGMGFFPHQTGCPEMIKPGTVQSFHNGLHSFSRTTHSLLITKQTDVKLYQEKQIFRESMVSTQLKQEAHREVNRSPPYFAHSQRGVKLQLLDSSDQESQDKIENVQKNESSADTDTMDMESFK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G035840
TK1151 IDTkA02G035840
OH-1004 IDLXL04_017495
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.000
Protein coverage (%)TK1151 100.000 / OH-1004 87.227
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G035840
LocationChr02:8929957-8933714 (-)
DescriptionSimilar to At2g16365: F-box protein At2g16365
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g16365 Together with PCHL, regulates growth and development adaptation to the ambient environment by controlling negatively phytochrome B (phyB) dark reversion, a temperature-dependent thermal relaxation process during which phyB reverts from the active to the inactive state. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_017495 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007623 circadian rhythm Biological Process
GO:0009637 response to blue light Biological Process
GO:0009658 chloroplast organization Biological Process
GO:0010017 red or far-red light signaling pathway Biological Process
GO:0010099 regulation of photomorphogenesis Biological Process
GO:0010114 response to red light Biological Process
GO:0010218 response to far red light Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:0090227 regulation of red or far-red light signaling pathway Biological Process
GO:0005634 nucleus Cellular Component
KEGG gene cross-reference
ath:AT2G16365
ath:AT4G34550
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.930
Rank 1 · TkA02G035840 · TK1151
Cytoplasm0.180
Rank 2 · TkA02G035840 · TK1151
Mitochondrion0.028
Rank 3 · TkA02G035840 · TK1151
Cell membrane0.023
Rank 4 · TkA02G035840 · TK1151
Endoplasmic reticulum0.010
Rank 5 · TkA02G035840 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q84V03Arabidopsis thalianasp|Q84V03|PCH1_ARATH Protein PHOTOPERIODIC CONTROL OF HYPOCOTYL 130.100%Swiss-ProtMedium

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