TkA02G034400 | RubberDandelionOmics

Gene overview

TkA02G034400

Reference: TK1151 Chr: Chr02 Coordinates: 8356611-8366959 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2016 bp · TkA02G034400|TK1151|cDNA

ATGTCGTCTTCAGGTTCAGGGTTAAACCTTGAAAATTATCTAATTCCATTGGAGGAGATCAACCGTGCCACCGATAACTTTAGTCCCCAGAGATGTATCGGAGATGGTGGATTTGGCAAGGTCTACAAAGGACAACTCTCCAAACGCTGGGAAAACAGGATAGCTGCTATCAAACGCCTAGATAAAGATAGCCACCAAGGAGAGCATGAGTTCCGCAACGAGCTTGAAATGTTCTCCAAGTTCCACCATAAAAATATCAT...

CDS

Download CDS FASTA

2016 bp · TkA02G034400|TK1151|CDS

ATGTCGTCTTCAGGTTCAGGGTTAAACCTTGAAAATTATCTAATTCCATTGGAGGAGATCAACCGTGCCACCGATAACTTTAGTCCCCAGAGATGTATCGGAGATGGTGGATTTGGCAAGGTCTACAAAGGACAACTCTCCAAACGCTGGGAAAACAGGATAGCTGCTATCAAACGCCTAGATAAAGATAGCCACCAAGGAGAGCATGAGTTCCGCAACGAGCTTGAAATGTTCTCCAAGTTCCACCATAAAAATATCAT...

Protein

Download Protein FASTA

671 aa · TkA02G034400|TK1151|PROTEIN

MSSSGSGLNLENYLIPLEEINRATDNFSPQRCIGDGGFGKVYKGQLSKRWENRIAAIKRLDKDSHQGEHEFRNELEMFSKFHHKNIIAFIGYCDEGSERIIVCEYAANGSLNYHLGDPNKMRYITWIQRLKICLGAATGLDYLHSGLGEENRVIHRDMKSANILLDENFVAKVCDFGLSRFGPRNQQNTHVYTKAAGTPYYLDPTYHESNILQKESDVYSFGVVLFEMMSGMLVYRQRMIGNKKMPQSIIKFVRQYNPGK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G034400`
TK1151 ID	TkA02G034400
OH-1004 ID	LXL04_017530
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	97.600
Protein coverage (%)	TK1151 94.784 / OH-1004 92.847 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G034400

Location Chr02:8356611-8366959 (+)

Description Similar to HERK1: Receptor-like protein kinase HERK 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g43900`	Myosin heavy chain that is required for the cell cycle- regulated transport of various organelles and proteins for their segregation.	Peroxisomal localization of a myosin XI isoform in Arabidopsis thaliana.2005 · DOI: 10.1093/pcp/pci085 Two class XI myosins function in organelle trafficking and root hair development in Arabidopsis.2008 · DOI: 10.1104/pp.107.113654 A comparative study of the involvement of 17 Arabidopsis myosin family members on the motility of Golgi and other organelles.2009 · DOI: 10.1104/pp.109.136853 Myosin XIK is a major player in cytoplasm dynamics and is regulated by two amino acids in its tail.2012 · DOI: 10.1093/jxb/err265
`At5g59700`	Probable receptor-like protein kinase At5g59700.	No verified direct reference in this release
`At3g46290`	Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner.	Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana.2009 · DOI: 10.1073/pnas.0812346106
`At2g39360`	Probable receptor-like protein kinase At2g39360.	No verified direct reference in this release
`At1g04160`	Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017530 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009741 response to brassinosteroid Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0010038 response to metal ion Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0010483 pollen tube reception Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009536 plastid Cellular Component

GO:0043680 filiform apparatus Cellular Component

GO:0099503 secretory vesicle Cellular Component

KEGG gene cross-reference

ath:AT2G39360

ath:AT3G46290

ath:AT5G38990

ath:AT5G39000

ath:AT5G59700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.439

Rank 1 · TkA02G034400 · TK1151

Cytoplasm0.416

Rank 2 · TkA02G034400 · TK1151

Nucleus0.204

Rank 3 · TkA02G034400 · TK1151

Golgi apparatus0.077

Rank 4 · TkA02G034400 · TK1151

Lysosome / Vacuole0.069

Rank 5 · TkA02G034400 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714PK_Tyr_Ser-Thr30-258 aa

PF00069Pkinase30-300 aa

PF01636APH144-184 aa

PF07714PK_Tyr_Ser-Thr280-308 aa

PF01843DIL280-321 aa

PF11554DUF3232298-367 aa

PF01843DIL364-384 aa

PF01843DIL523-623 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G034400	`PF07714`	PK_Tyr_Ser-Thr	30	258	9.4e-45	153.6
TkA02G034400	`PF00069`	Pkinase	30	300	1.9e-44	152.8
TkA02G034400	`PF01636`	APH	144	184	0.026	15.0
TkA02G034400	`PF07714`	PK_Tyr_Ser-Thr	280	308	9.4e-45	153.6
TkA02G034400	`PF01843`	DIL	280	321	5.2e-19	69.1
TkA02G034400	`PF11554`	DUF3232	298	367	0.068	13.9
TkA02G034400	`PF01843`	DIL	364	384	5.2e-19	69.1
TkA02G034400	`PF01843`	DIL	523	623	5.2e-19	69.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LKB9`	Arabidopsis thaliana	sp\|Q9LKB9\|MYO6_ARATH Myosin-6	42.100%	Swiss-Prot	Low
`Q9FN92`	Arabidopsis thaliana	sp\|Q9FN92\|Y5597_ARATH Probable receptor-like protein kinase At5g59700	39.900%	Swiss-Prot	Medium
`Q9LX66`	Arabidopsis thaliana	sp\|Q9LX66\|HERK_ARATH Receptor-like protein kinase HERK 1	43.700%	Swiss-Prot	Low
`O80623`	Arabidopsis thaliana	sp\|O80623\|Y2393_ARATH Probable receptor-like protein kinase At2g39360	43.000%	Swiss-Prot	Low
`F4I460`	Arabidopsis thaliana	sp\|F4I460\|MYO8_ARATH Myosin-8	42.100%	Swiss-Prot	Low

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