TkA02G027410 | RubberDandelionOmics

Gene overview

TkA02G027410

Reference: TK1151 Chr: Chr02 Coordinates: 6642345-6646853 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2047 bp · TkA02G027410|TK1151|cDNA

CCCTTCTCTGCAACGAACTATCCGTGTTCATGTATTCCATCATCTCTCACACGCTATCTTCCTCTCCTATTCCTTCACGTCCCTACTCCGGCCGAGTGCCGACCGTTACACTTTCCGGCAACCGATCGCTGTTAGCTTCCATTGCTCATCATGTCCACCGCCAACGGTAATACGAAACATGACCGCTCCCCCTCAGCTGTCTACAGCGAAGTCCAGTCCAGCCGCCTTCAAGTCTCGCTTCCTCTCCCTTCCGTACTCAA...

CDS

Download CDS FASTA

1035 bp · TkA02G027410|TK1151|CDS

ATGCCCAAAACCATTGATGGTGATTTGAAGTGCAAAGAGGTTCCAATAAGTTTTGGATTTGACACTGCCTGCAAGATATATTCAGAAATGATTGGAAATTTAATGGTAGATGCACGATCCACTGGAAAATATTATCACTTTGTAAGGTTAATGGGTCGTGCTGCATCACACATAACACTGGAATGTGCTTTACAGACTCATCCAAACATAGCAATCATTGGAGAAGAGGTTGCTGCACAAAAGCAGACACTAAAGAGTGT...

Protein

Download Protein FASTA

344 aa · TkA02G027410|TK1151|PROTEIN

MPKTIDGDLKCKEVPISFGFDTACKIYSEMIGNLMVDARSTGKYYHFVRLMGRAASHITLECALQTHPNIAIIGEEVAAQKQTLKSVTDYITNIICKRAEAGYNYGIILIPEGLIDFIPEMQSLIGELNEILAHGPIDREGAWKKKLRSQSHELFEILPKAIQEQLLLERDPHGNVQVAKIETEKMLIQMVEAKLENRKKEGKYKKDFKGQPHFFGYEGRCGLPSKFDSNYCYALGFCAAALLHSGKTGLISSVGNLGAP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G027410`
TK1151 ID	TkA02G027410
OH-1004 ID	LXL04_017574
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	89.100
Protein coverage (%)	TK1151 99.709 / OH-1004 61.142 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G027410

Location Chr02:6642345-6646853 (+)

Description Similar to PFP-BETA1: Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g12000`	Catalytic subunit of pyrophosphate--fructose 6-phosphate 1-phosphotransferase.	No verified direct reference in this release
`At4g04040`	Catalytic subunit of pyrophosphate--fructose 6-phosphate 1-phosphotransferase.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017574 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006002 fructose 6-phosphate metabolic process Biological Process

GO:0009749 response to glucose Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0015979 photosynthesis Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0003872 6-phosphofructokinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0046872 metal ion binding Molecular Function

GO:0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G12000

ath:AT4G04040

sot:102577862

sta:STHERM_c17480

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.675

Rank 1 · TkA02G027410 · TK1151

Nucleus0.182

Rank 2 · TkA02G027410 · TK1151

Mitochondrion0.134

Rank 3 · TkA02G027410 · TK1151

Endoplasmic reticulum0.127

Rank 4 · TkA02G027410 · TK1151

Cell membrane0.115

Rank 5 · TkA02G027410 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00365PFK1-241 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G027410	`PF00365`	PFK	1	241	1.4e-15	58.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8W4M5`	Arabidopsis thaliana	sp\|Q8W4M5\|PFPB1_ARATH Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta 1	80.400%	Swiss-Prot	High
`F4JGR5`	Arabidopsis thaliana	sp\|F4JGR5\|PFPB2_ARATH Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta 2	78.100%	Swiss-Prot	High

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