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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G025520
Reference: TK1151 Chr: Chr02 Coordinates: 6160515-6167171 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

897 bp · TkA02G025520|TK1151|cDNA

ATGGCCGCCACTTCTTCATCTTTATCGGTTGAACAAAAGAACTTTAAGTACGATGTATTTTTGAGTTTTAGAGGTACAGACACTCGTAACAACTTCATCGGTCATCTTTATCAGGCTCTTCAGGAAAAAGGTATCTATACTTATAAGGACGACGAAAAAATCACAAAAGGGAAAAGGATCAGTGATGATCTCCTCGAATCCATTGTAGACTCACGATTTTACATCGTGGTTTTCTCAAAAAACTATGCTTCTTCATGTTG...

CDS

Download CDS FASTA

897 bp · TkA02G025520|TK1151|CDS

ATGGCCGCCACTTCTTCATCTTTATCGGTTGAACAAAAGAACTTTAAGTACGATGTATTTTTGAGTTTTAGAGGTACAGACACTCGTAACAACTTCATCGGTCATCTTTATCAGGCTCTTCAGGAAAAAGGTATCTATACTTATAAGGACGACGAAAAAATCACAAAAGGGAAAAGGATCAGTGATGATCTCCTCGAATCCATTGTAGACTCACGATTTTACATCGTGGTTTTCTCAAAAAACTATGCTTCTTCATGTTG...

Protein

Download Protein FASTA

298 aa · TkA02G025520|TK1151|PROTEIN

MAATSSSLSVEQKNFKYDVFLSFRGTDTRNNFIGHLYQALQEKGIYTYKDDEKITKGKRISDDLLESIVDSRFYIVVFSKNYASSCWCLEELVKIMECHNTEKHITYPVFYDVEPTEVRHQIGVVGEAFAKYLPKTFQGNNLVTLEMPFSAVQQLWEGGEHKVLDKLRFLDFSNSRHMKLDPRLTPNLEIINLSGCHGLLGGMWTLKHLISLDLHGSRLRNLPEDIGRSRCLENLSLSNTNITHLPDSICMLKHLKYIKL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G025520
TK1151 IDTkA02G025520
OH-1004 IDLXL04_017618
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)97.800
Protein coverage (%)TK1151 45.973 / OH-1004 36.340
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G025520
LocationChr02:6160515-6167171 (-)
DescriptionSimilar to RPV1: Disease resistance protein RPV1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g72930 Disease resistance protein. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_017618 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006952 defense response Biological Process
GO:0007165 signal transduction Biological Process
GO:0043068 positive regulation of programmed cell death Biological Process
GO:0050832 defense response to fungus Biological Process
GO:1902065 response to L-glutamate Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009941 chloroplast envelope Cellular Component
GO:0000976 transcription cis-regulatory region binding Molecular Function
GO:0003700 DNA-binding transcription factor activity Molecular Function
KEGG gene cross-reference
ath:AT4G12020
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.385
Rank 1 · TkA02G025520 · TK1151
Cell membrane0.241
Rank 2 · TkA02G025520 · TK1151
Nucleus0.222
Rank 3 · TkA02G025520 · TK1151
Endoplasmic reticulum0.154
Rank 4 · TkA02G025520 · TK1151
Extracellular0.064
Rank 5 · TkA02G025520 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01582TIR16-132 aa
PF26659PH_DUOX16-45 aa
PF13676TIR_219-115 aa
PF05075DUF68449-86 aa
PF25019LRR_R13L1-DRL21126-171 aa
PF07725LRR_3141-158 aa
PF26659PH_DUOX165-179 aa
PF12799LRR_4166-196 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G025520PF01582TIR161323.7e-41141.6
TkA02G025520PF26659PH_DUOX16450.1512.4
TkA02G025520PF13676TIR_2191151.4e-1455.3
TkA02G025520PF05075DUF68449860.1711.6
TkA02G025520PF25019LRR_R13L1-DRL211261717.5e-0523.4
TkA02G025520PF07725LRR_31411580.0001921.8
TkA02G025520PF26659PH_DUOX1651790.1512.4
TkA02G025520PF12799LRR_41661961.7e-0628.8
TkA02G025520PF00560LRR_11661798.2e-0522.7
TkA02G025520PF25019LRR_R13L1-DRL211822147.5e-0523.4
TkA02G025520PF13855LRR_81861969.7e-0626.0
TkA02G025520PF23598LRR_141872841.7e-1350.8
TkA02G025520PF00560LRR_11871978.2e-0522.7
TkA02G025520PF23952LRR_EndoS1991990.02415.6
TkA02G025520PF13855LRR_82082639.7e-0626.0
TkA02G025520PF00560LRR_12082278.2e-0522.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SSN3Arabidopsis thalianasp|Q9SSN3|TIR_ARATH Toll/interleukin-1 receptor-like protein52.100%Swiss-ProtLow

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