TkA02G018600 | RubberDandelionOmics

Gene overview

TkA02G018600

Reference: TK1151 Chr: Chr02 Coordinates: 4365698-4366682 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

705 bp · TkA02G018600|TK1151|cDNA

ATGCTTCCCTTTGTGGTGGCGCTCACCGTAATCGCCGCTACCGTTAACCTTCACCTGTTTTACAGGGTGTCAAAGGAACTTTATGCTCCAGCTCTAGGTGGAATCATGTTATCAATCAGAATCAAGCTTTCAATCGAAAATTTCGCGCTTGCTTTTAAGAGACCTATACCATTATCAGTCGGGTTTCTCTCTCAATATGTATTGAAACCCGTTCTGAAATCATTCGGAATGTCCCCCATGTACTACACCAGATTTGTACT...

CDS

Download CDS FASTA

705 bp · TkA02G018600|TK1151|CDS

ATGCTTCCCTTTGTGGTGGCGCTCACCGTAATCGCCGCTACCGTTAACCTTCACCTGTTTTACAGGGTGTCAAAGGAACTTTATGCTCCAGCTCTAGGTGGAATCATGTTATCAATCAGAATCAAGCTTTCAATCGAAAATTTCGCGCTTGCTTTTAAGAGACCTATACCATTATCAGTCGGGTTTCTCTCTCAATATGTATTGAAACCCGTTCTGAAATCATTCGGAATGTCCCCCATGTACTACACCAGATTTGTACT...

Protein

Download Protein FASTA

234 aa · TkA02G018600|TK1151|PROTEIN

MLPFVVALTVIAATVNLHLFYRVSKELYAPALGGIMLSIRIKLSIENFALAFKRPIPLSVGFLSQYVLKPVLKSFGMSPMYYTRFVLMSCVARVQLSSYASFLSKSDVALSKSLASSSTITSVLITPLLTGLLIGSVVPVDAMAMSKTILQVVLVLVTLGLVLNTYAKSVVSVIQPVMPFVAMFCTSICIGSPLAINQRQILSAEGLKFIWPVLTFHSAAFTAGYWISKLPFCR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G018600`
TK1151 ID	TkA02G018600
OH-1004 ID	LXL04_036713
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	82.400
Protein coverage (%)	TK1151 100.000 / OH-1004 55.452 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G018600

Location Chr02:4365698-4366682 (-)

Description Similar to BASS3: Probable sodium/metabolite cotransporter BASS3, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g25410`	May function as sodium-coupled metabolite transporter across the chloroplast envelope.	No verified direct reference in this release
`At4g22840`	May function as sodium-coupled metabolite transporter across the chloroplast envelope.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0475400`	May function as sodium-coupled metabolite transporter across the chloroplast envelope.	No verified direct reference in this release
`UniProt: B8BDK4`	May function as sodium-coupled metabolite transporter across the chloroplast envelope.	No verified direct reference in this release
`Os09g0520600`	May function as sodium-coupled metabolite transporter across the chloroplast envelope.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036713 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009507 chloroplast Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0016020 membrane Cellular Component

GO:0043879 glycolate transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT3G25410

ath:AT4G22840

dosa:Os02g0475400

dosa:Os09g0520600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.302

Rank 1 · TkA02G018600 · TK1151

Endoplasmic reticulum0.219

Rank 2 · TkA02G018600 · TK1151

Lysosome / Vacuole0.174

Rank 3 · TkA02G018600 · TK1151

Plastid0.093

Rank 4 · TkA02G018600 · TK1151

Golgi apparatus0.083

Rank 5 · TkA02G018600 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01758SBF30-203 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G018600	`PF01758`	SBF	30	203	1.4e-21	77.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8RXE8`	Arabidopsis thaliana	sp\|Q8RXE8\|BASS3_ARATH Probable sodium/metabolite cotransporter BASS3, chloroplastic	66.500%	Swiss-Prot	High
`Q8VYY4`	Arabidopsis thaliana	sp\|Q8VYY4\|BASS6_ARATH Probable sodium/metabolite cotransporter BASS6, chloroplastic	36.700%	Swiss-Prot	Medium
`Q6K739`	Oryza sativa subsp. japonica	sp\|Q6K739\|BASS3_ORYSJ Probable sodium/metabolite cotransporter BASS3, chloroplastic	64.900%	Swiss-Prot	High
`B8BDK4`	Oryza sativa subsp. indica	sp\|B8BDK4\|BASS5_ORYSI Probable sodium/metabolite cotransporter BASS5, chloroplastic	36.800%	Swiss-Prot	Medium
`Q650U0`	Oryza sativa subsp. japonica	sp\|Q650U0\|BASS5_ORYSJ Probable sodium/metabolite cotransporter BASS5, chloroplastic	36.800%	Swiss-Prot	Medium

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