TkA02G001550 | RubberDandelionOmics

Gene overview

TkA02G001550

Reference: TK1151 Chr: Chr02 Coordinates: 347872-357899 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA No cDNA sequence available

cDNA

No cDNA sequence is available for this reference.

CDS

Download CDS FASTA

1182 bp · TkA02G001550|TK1151|CDS

GAGATCATCACAGCAATCCGTGAGCAGCTCGAGACGGTGATTGACGAGCGGGTGACGGCTGCCATCGGTGCAACACAGCAGCAGCATCACCAGCGAGGGTTCTCCTACAAGGAGTTCTCGGCGTGCTCTCCCCCTCTGTTTAAGGGGAGCACTGATCCCATTACCTGTATGCGATGGATTTCCGATGTCGAGGGCGCATTCCTGACTAGCGCCTGTCCGGAAAACGCTAAAGTCAGGTGTGCTAGTAATCTCCTCCGCGA...

Protein

Download Protein FASTA

393 aa · TkA02G001550|TK1151|PROTEIN

EIITAIREQLETVIDERVTAAIGATQQQHHQRGFSYKEFSACSPPLFKGSTDPITCMRWISDVEGAFLTSACPENAKVRCASNLLRDAAKDWWSTWTKAMPNPEVSEMPWEDFVTRFRAQYVPQVEMDRLAREFLTMEQTTESISELNRKFNEMAIFCPQYAADEGMKMARYTQMLRTDIREFVVAYPRTSLADLMDAARRREIELDTQVRKRKAAQALAPASSGQKKVKIHDTRSGQEGGGRGPPAGLERTGPVGCYKC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G001550`
TK1151 ID	TkA02G001550
OH-1004 ID	LXL04_027866
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	83.300
Protein coverage (%)	TK1151 86.768 / OH-1004 10.095 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA02G001550`
Location	Chr02:347872-357899 (-)
Description	Similar to TY3B-G: Transposon Ty3-G Gag-Pol polyprotein (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_027866` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006310 DNA recombination Biological Process GO:0006508 proteolysis Biological Process GO:0015074 DNA integration Biological Process GO:0075523 viral translational frameshifting Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0003677 DNA binding Molecular Function GO:0003723 RNA binding Molecular Function GO:0003887 DNA-directed DNA polymerase activity Molecular Function GO:0003964 RNA-directed DNA polymerase activity Molecular Function GO:0004190 aspartic-type endopeptidase activity Molecular Function GO:0004519 endonuclease activity Molecular Function
KEGG gene cross-reference	sce:YGR109W-B sce:YIL082W-A These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.556

Rank 1 · TkA02G001550 · TK1151

Cytoplasm0.471

Rank 2 · TkA02G001550 · TK1151

Mitochondrion0.084

Rank 3 · TkA02G001550 · TK1151

Cell membrane0.047

Rank 4 · TkA02G001550 · TK1151

Endoplasmic reticulum0.036

Rank 5 · TkA02G001550 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03732PEG10_N-capsid44-122 aa

PF19259Ty3_capsid45-200 aa

PF00098zf-CCHC256-271 aa

PF30379SLU7_N256-270 aa

PF27939DUF8363256-295 aa

PF13917zf-CCHC_3256-272 aa

PF14392zf-CCHC_4257-271 aa

PF13917zf-CCHC_3275-291 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G001550	`PF03732`	PEG10_N-capsid	44	122	1.5e-13	51.6
TkA02G001550	`PF19259`	Ty3_capsid	45	200	3e-11	43.8
TkA02G001550	`PF00098`	zf-CCHC	256	271	5e-11	42.9
TkA02G001550	`PF30379`	SLU7_N	256	270	0.0012	19.0
TkA02G001550	`PF27939`	DUF8363	256	295	0.39	11.3
TkA02G001550	`PF13917`	zf-CCHC_3	256	272	1.1	9.9
TkA02G001550	`PF14392`	zf-CCHC_4	257	271	0.036	14.4
TkA02G001550	`PF13917`	zf-CCHC_3	275	291	1.1	9.9
TkA02G001550	`PF00098`	zf-CCHC	276	291	5e-11	42.9
TkA02G001550	`PF14392`	zf-CCHC_4	276	291	0.036	14.4
TkA02G001550	`PF30379`	SLU7_N	277	290	0.0012	19.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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