TkA01G634870 | RubberDandelionOmics

Gene overview

TkA01G634870

Reference: TK1151 Chr: Chr01 Coordinates: 160601578-160616756 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3544 bp · TkA01G634870|TK1151|cDNA

GTGGCTGAGCTCCCATGTCTCATCTTCAAGTTCACAAGCTGTCTGATTAAAAACACTTTGTTGGCCGCTGAGGGACGCTCGTACATATCAGATAGCGTCTTGAGTAGTCCATAGGTTGTCGTGATGCTAGCAATGTTATAAGCAACATTCTTCGCTAGTGACAGCCTAACTACCCCAAGAGCCTGCCGGTCTAATAAGTTCCAGTCCTCCTGACTCATGACGAAAGGTTTGTTTTCAGCGAGTGGCTCGTGCAACTTCTT...

CDS

Download CDS FASTA

831 bp · TkA01G634870|TK1151|CDS

ATGCATGCTTACCAATTTCTGAGGAAGTGGCTTGTGGAGCATCCTAAGTTTCTCAACAACCCATTTTATGTTGCTGGCGATTCCTACGGCGGCATATTGGTGCCTATGATTGTCCAAAAAATATTCAACGACAATGAAGTCGGAGAAAGGCCATACATTAACATCAAGGGGTATGTGCTTGGTAATCCTGCAGCAGACAGACATGATGAATACAATGTAAGAACCCGATATGCACATAGTATGGCGCTCTTATCGGATAC...

Protein

Download Protein FASTA

276 aa · TkA01G634870|TK1151|PROTEIN

MHAYQFLRKWLVEHPKFLNNPFYVAGDSYGGILVPMIVQKIFNDNEVGERPYINIKGYVLGNPAADRHDEYNVRTRYAHSMALLSDTIYKSTKENCHGEYVNVDPNNTLCINDLQVVDKHDNYLSMPLWANRREVREALHIPEDLNDIEWVIANDSLLFYLNRKPISFTHNIWSTLAYHRHLLDKKCQVLVYSGDHDMRVPYMSTLNWIKALYLLLVDDWRPWFVDEQVAGYTMEYLKDQYKMTFATIKGGGHTAPEYKP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G634870`
TK1151 ID	TkA01G634870
OH-1004 ID	LXL04_029169
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	63.900
Protein coverage (%)	TK1151 100.000 / OH-1004 77.778 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G634870

Location Chr01:160601578-160616756 (+)

Description Similar to SCPL18: Serine carboxypeptidase-like 18

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g12203`	Probable carboxypeptidase.	No verified direct reference in this release
`At3g10450`	Probable carboxypeptidase.	No verified direct reference in this release
`At1g33540`	Probable carboxypeptidase.	No verified direct reference in this release
`At2g23000`	Involved in the biosynthesis of sinapoylated anthocyanins.	Related Arabidopsis serine carboxypeptidase-like sinapoylglucose acyltransferases display distinct but overlapping substrate specificities.2007 · DOI: 10.1104/pp.107.098970 The ARABIDOPSIS accession Pna-10 is a naturally occurring sng1 deletion mutant.2010 · DOI: 10.1093/mp/ssp090
`At1g73300`	Probable carboxypeptidase.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029169 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0019748 secondary metabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004185 serine-type carboxypeptidase activity Molecular Function

GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups Molecular Function

GO:0016752 sinapoyltransferase activity Molecular Function

GO:0047158 sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G33540

ath:AT1G73300

ath:AT2G22980

ath:AT2G23010

ath:AT3G12203

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.404

Rank 1 · TkA01G634870 · TK1151

Extracellular0.288

Rank 2 · TkA01G634870 · TK1151

Endoplasmic reticulum0.124

Rank 3 · TkA01G634870 · TK1151

Cytoplasm0.123

Rank 4 · TkA01G634870 · TK1151

Cell membrane0.052

Rank 5 · TkA01G634870 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00450Peptidase_S102-119 aa

PF07859Abhydrolase_39-81 aa

PF00326Peptidase_S910-39 aa

PF00450Peptidase_S10127-273 aa

PF00326Peptidase_S9163-212 aa

PF07859Abhydrolase_3191-196 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G634870	`PF00450`	Peptidase_S10	2	119	5e-68	231.1
TkA01G634870	`PF07859`	Abhydrolase_3	9	81	0.0046	17.5
TkA01G634870	`PF00326`	Peptidase_S9	10	39	6.2e-06	26.6
TkA01G634870	`PF00450`	Peptidase_S10	127	273	5e-68	231.1
TkA01G634870	`PF00326`	Peptidase_S9	163	212	6.2e-06	26.6
TkA01G634870	`PF07859`	Abhydrolase_3	191	196	0.0046	17.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C7D6`	Arabidopsis thaliana	sp\|Q9C7D6\|SCP17_ARATH Serine carboxypeptidase-like 17	42.900%	Swiss-Prot	Medium
`Q9SQX6`	Arabidopsis thaliana	sp\|Q9SQX6\|SCP7_ARATH Serine carboxypeptidase-like 7	42.900%	Swiss-Prot	Medium
`Q9C7Z9`	Arabidopsis thaliana	sp\|Q9C7Z9\|SCP18_ARATH Serine carboxypeptidase-like 18	42.300%	Swiss-Prot	Medium
`O64810`	Arabidopsis thaliana	sp\|O64810\|SCP10_ARATH Serine carboxypeptidase-like 10	41.500%	Swiss-Prot	Medium
`Q9CAU3`	Arabidopsis thaliana	sp\|Q9CAU3\|SCPL2_ARATH Serine carboxypeptidase-like 2	42.600%	Swiss-Prot	Medium

JBrowse

View in Genome Browser

Gene Card