TkA01G628790 | RubberDandelionOmics

Gene overview

TkA01G628790

Reference: TK1151 Chr: Chr01 Coordinates: 158995968-158998181 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1487 bp · TkA01G628790|TK1151|cDNA

AAAACGTTGGCAATGTTCCGATCAACACTCGTGTCTCTTCACGCACTTGCTTACTGCAGTAAAACCCGCCAATTAAAAAACACACAACCCACTGCATTTACCCTCTTCATGCGGTACGTGTCTTTTCCTTTCAACCAACACAACGCTTCCTCCAACTCTCTCCAACCGCTTTAAACCACCACATATCCGCCATTGTTATCCCCCTTATCTCCATCACCTTCTGTAACACACACACACACACACACACACACACACACACA...

CDS

Download CDS FASTA

1050 bp · TkA01G628790|TK1151|CDS

ATGGATGAGTTTCTTCTTTGTGATGAGGTTTGGGATATGAGTCCGGTGAGTACTACTCCTGGCCCTTCACTTGATCATCATACACGACATGATCGCCATAACCAAAATGAAACGATGAACACATTGGTGCACCCCATTACGAAAGAAGAATGTGAACGCTTGTTTGCTAATCATCTACGAAAGGAATTGAAGTGTATGACTGGATCAGGATACGTAAAATTTCTCGAATGCAATCCTTTCGTTGCTACTTGTAGATTGAA...

Protein

Download Protein FASTA

349 aa · TkA01G628790|TK1151|PROTEIN

MDEFLLCDEVWDMSPVSTTPGPSLDHHTRHDRHNQNETMNTLVHPITKEECERLFANHLRKELKCMTGSGYVKFLECNPFVATCRLKAVQWLIHSHRRFNFCVGNVLKAVNYVDRFIYINQCHGWNYTMMELLSVAALSIAIKFGETSPPSLNEIQEGLEYSFEAKLIQRMELRLMESLGWELNSTTPHSYVELIIWELNSHFKNHILDELSSRLSDVLLSSSLDYKLLQYRPSVIVMSGLRCVLEVFPPLKNQDCLSHI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G628790`
TK1151 ID	TkA01G628790
OH-1004 ID	LXL04_000185
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	96.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G628790

Location Chr01:158995968-158998181 (-)

Description Similar to CYCD7-1: Putative cyclin-D7-1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g34160`	Involved in the control of the cell cycle at the G1/S (start) transition.	Cytokinin activation of Arabidopsis cell division through a D-type cyclin.1999 · DOI: 10.1126/science.283.5407.1541 Ectopic D-type cyclin expression induces not only DNA replication but also cell division in Arabidopsis trichomes.2002 · DOI: 10.1073/pnas.092657299 Altered cell cycle distribution, hyperplasia, and inhibited differentiation in Arabidopsis caused by the D-type cyclin CYCD3.2003 · DOI: 10.1105/tpc.004838 The D-type cyclin CYCD3;1 is limiting for the G1-to-S-phase transition in Arabidopsis.2006 · DOI: 10.1105/tpc.105.039636 Requirement for A-type cyclin-dependent kinase and cyclins for the terminal division in the stomatal lineage of Arabidopsis.2014 · DOI: 10.1093/jxb/eru139

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000185 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000082 G1/S transition of mitotic cell cycle Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0010444 guard mother cell differentiation Biological Process

GO:0048316 seed development Biological Process

GO:0051301 cell division Biological Process

GO:0051726 regulation of cell cycle Biological Process

GO:1901371 regulation of leaf morphogenesis Biological Process

GO:0000307 cyclin-dependent protein kinase holoenzyme complex Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity Molecular Function

KEGG gene cross-reference

ath:AT1G70210

ath:AT3G50070

ath:AT5G02110

ath:AT5G67260

dosa:Os09g0466100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.944

Rank 1 · TkA01G628790 · TK1151

Cytoplasm0.135

Rank 2 · TkA01G628790 · TK1151

Cell membrane0.020

Rank 3 · TkA01G628790 · TK1151

Mitochondrion0.014

Rank 4 · TkA01G628790 · TK1151

Endoplasmic reticulum0.010

Rank 5 · TkA01G628790 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00134Cyclin_N58-184 aa

PF02984Cyclin_C187-284 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G628790	`PF00134`	Cyclin_N	58	184	1e-17	64.7
TkA01G628790	`PF02984`	Cyclin_C	187	284	2.5e-06	28.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P42753`	Arabidopsis thaliana	sp\|P42753\|CCD31_ARATH Cyclin-D3-1	31.300%	Swiss-Prot	Medium

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