TkA01G627850 | RubberDandelionOmics

Gene overview

TkA01G627850

Reference: TK1151 Chr: Chr01 Coordinates: 158770712-158771089 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

378 bp · TkA01G627850|TK1151|cDNA

ATGGGCGACGAGTTAGCTTTGATCAATTCTCCGTCTCCGGTGGCCGTTGCCGGAGGCAACCATCCTCATTCATCTCGTCCGCTCCCTTTCCGTGAGGATTGTTGGAGCGAGGATGCGACGTCCACGCTCGTCGACGCTTGGGGCCGCCGTTACCTTGAGCTCAACCGTGGGAACCTCCGTCAAAAGGATTGGCAGGAGGTCGCCGATGCCGTCAACGCCCGTCACGGCCACACCAAAAAAACCAGGCGTACCGATGTTCA...

CDS

Download CDS FASTA

378 bp · TkA01G627850|TK1151|CDS

ATGGGCGACGAGTTAGCTTTGATCAATTCTCCGTCTCCGGTGGCCGTTGCCGGAGGCAACCATCCTCATTCATCTCGTCCGCTCCCTTTCCGTGAGGATTGTTGGAGCGAGGATGCGACGTCCACGCTCGTCGACGCTTGGGGCCGCCGTTACCTTGAGCTCAACCGTGGGAACCTCCGTCAAAAGGATTGGCAGGAGGTCGCCGATGCCGTCAACGCCCGTCACGGCCACACCAAAAAAACCAGGCGTACCGATGTTCA...

Protein

Download Protein FASTA

125 aa · TkA01G627850|TK1151|PROTEIN

MGDELALINSPSPVAVAGGNHPHSSRPLPFREDCWSEDATSTLVDAWGRRYLELNRGNLRQKDWQEVADAVNARHGHTKKTRRTDVQCKNRIDTLKKSIRLRKLGFRNPMGKLVVIGRFTLVWTP

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G627850`
TK1151 ID	TkA01G627850
OH-1004 ID	LXL04_000196
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	87.600
Protein coverage (%)	TK1151 90.400 / OH-1004 36.688 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G627850

Location Chr01:158770712-158771089 (+)

Description Similar to ASIL2: Trihelix transcription factor ASIL2

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g05550`	Probable transcription regulator (By similarity).	No verified direct reference in this release
`At3g11100`	Transcription regulator.	Interaction of Arabidopsis Trihelix-Domain Transcription Factors VFP3 and VFP5 with Agrobacterium Virulence Protein VirF.2015 · DOI: 10.1371/journal.pone.0142128
`At3g14180`	Transcription regulator that may repress the maturation program during early embryogenesis.	MicroRNAs regulate the timing of embryo maturation in Arabidopsis.2011 · DOI: 10.1104/pp.110.171355
`At1g54060`	Transcription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter.	Repression of seed maturation genes by a trihelix transcriptional repressor in Arabidopsis seedlings.2009 · DOI: 10.1105/tpc.108.061309 MicroRNAs regulate the timing of embryo maturation in Arabidopsis.2011 · DOI: 10.1104/pp.110.171355 ASIL1 is required for proper timing of seed filling in Arabidopsis.2011 · DOI: 10.4161/psb.6.12.18709

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000196 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009733 response to auxin Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0010468 regulation of gene expression Biological Process

GO:0040029 epigenetic regulation of gene expression Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003682 chromatin binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

KEGG gene cross-reference

ath:AT1G54060

ath:AT3G11100

ath:AT3G14180

ath:AT5G05550

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.945

Rank 1 · TkA01G627850 · TK1151

Cytoplasm0.099

Rank 2 · TkA01G627850 · TK1151

Cell membrane0.031

Rank 3 · TkA01G627850 · TK1151

Endoplasmic reticulum0.026

Rank 4 · TkA01G627850 · TK1151

Plastid0.014

Rank 5 · TkA01G627850 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13837Myb_DNA-bind_433-100 aa

PF12776Myb_DNA-bind_335-101 aa

PF00249Myb_DNA-binding62-91 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G627850	`PF13837`	Myb_DNA-bind_4	33	100	1.7e-13	51.5
TkA01G627850	`PF12776`	Myb_DNA-bind_3	35	101	0.0016	20.0
TkA01G627850	`PF00249`	Myb_DNA-binding	62	91	0.063	14.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FFG0`	Arabidopsis thaliana	sp\|Q9FFG0\|ENAP2_ARATH Trihelix transcription factor ENAP2	62.500%	Swiss-Prot	Medium
`Q8VZI9`	Arabidopsis thaliana	sp\|Q8VZI9\|ENAP1_ARATH Trihelix transcription factor ENAP1	68.500%	Swiss-Prot	Medium
`Q9LJG8`	Arabidopsis thaliana	sp\|Q9LJG8\|ASIL2_ARATH Trihelix transcription factor ASIL2	47.300%	Swiss-Prot	Medium
`Q9SYG2`	Arabidopsis thaliana	sp\|Q9SYG2\|ASIL1_ARATH Trihelix transcription factor ASIL1	50.700%	Swiss-Prot	Medium

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