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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G627820
Reference: TK1151 Chr: Chr01 Coordinates: 158758885-158760284 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

928 bp · TkA01G627820|TK1151|cDNA

GTTGTTGTGGCAAATGACTGGAAGGATACAGACAATAAAGTCATGCCTGTAAAGCAATGGCTGGAAGAAAGACGAGTTTTCCAGGGAGAAATGCAGCATCTAAAGGAGAAACTGACAATTGCAGAACGTACCGCAAAGGCAGAGGCGCAGTTAAAAGAAAAATACCTATTGCGATTCAAAGTTTTGGAGGAAAGATTTAAATCGTCATCTCGTAACATTGTTACCCCAGAAAAACCTGTGAGCAATGGGCGTCAGTCTCT...

CDS

Download CDS FASTA

708 bp · TkA01G627820|TK1151|CDS

ATGCCTGTAAAGCAATGGCTGGAAGAAAGACGAGTTTTCCAGGGAGAAATGCAGCATCTAAAGGAGAAACTGACAATTGCAGAACGTACCGCAAAGGCAGAGGCGCAGTTAAAAGAAAAATACCTATTGCGATTCAAAGTTTTGGAGGAAAGATTTAAATCGTCATCTCGTAACATTGTTACCCCAGAAAAACCTGTGAGCAATGGGCGTCAGTCTCTTGGAGGACTTCAAAATTTATCAAGATCATCCTCTAGTAGATT...

Protein

Download Protein FASTA

235 aa · TkA01G627820|TK1151|PROTEIN

MPVKQWLEERRVFQGEMQHLKEKLTIAERTAKAEAQLKEKYLLRFKVLEERFKSSSRNIVTPEKPVSNGRQSLGGLQNLSRSSSSRFSSRNIPKNGSISSKVHDCSKLLESNKVFPSGPDDHVDELRENGNALGKDNMNHKDLVSGMLYDMLQKEVLTLKKACHQKDQNLKDKDNTIEILARNVETLNRAMEVEGKRTRREIAAMEKELASLRVGKERESRMGRRPSAPRTRVMA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G627820
TK1151 IDTkA01G627820
OH-1004 IDLXL04_000198
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)99.600
Protein coverage (%)TK1151 100.000 / OH-1004 42.727
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G627820
LocationChr01:158758885-158760284 (+)
DescriptionSimilar to MAP70.2: Microtubule-associated protein 70-2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g17220 Plant-specific protein that interact with microtubules and regulates microtubule dynamics. No verified direct reference in this release
At1g24764 Plant-specific protein that interact with microtubules. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os12g0640900 Plant-specific protein that interact with microtubules. No verified direct reference in this release
Os02g0736100 Plant-specific protein that interact with microtubules. No verified direct reference in this release
Os06g0251700 Plant-specific protein that interact with microtubules. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000198 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007010 cytoskeleton organization Biological Process
GO:0009832 plant-type cell wall biogenesis Biological Process
GO:0010051 xylem and phloem pattern formation Biological Process
GO:0071555 cell wall organization Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005819 spindle Cellular Component
GO:0005874 microtubule Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009524 phragmoplast Cellular Component
GO:0010005 cortical microtubule, transverse to long axis Cellular Component
GO:0008017 microtubule binding Molecular Function
KEGG gene cross-reference
ath:AT1G14840
ath:AT1G24764
ath:AT1G68060
ath:AT2G01750
dosa:Os02g0736100
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.600
Rank 1 · TkA01G627820 · TK1151
Nucleus0.317
Rank 2 · TkA01G627820 · TK1151
Cell membrane0.086
Rank 3 · TkA01G627820 · TK1151
Golgi apparatus0.069
Rank 4 · TkA01G627820 · TK1151
Lysosome / Vacuole0.046
Rank 5 · TkA01G627820 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07058MAP701-113 aa
PF02841GBP_C4-58 aa
PF15619Lebercilin8-34 aa
PF25764KIF21A_4th8-76 aa
PF30917CCDC57_N9-51 aa
PF13325MCRS_N10-49 aa
PF27823SCD2_helical_N13-38 aa
PF00901Orbi_VP514-79 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G627820PF07058MAP7011138.6e-69233.5
TkA01G627820PF02841GBP_C4580.09612.8
TkA01G627820PF15619Lebercilin8340.710.1
TkA01G627820PF25764KIF21A_4th8761.29.5
TkA01G627820PF30917CCDC57_N9513.37.2
TkA01G627820PF13325MCRS_N10491.89.1
TkA01G627820PF27823SCD2_helical_N13388.87.3
TkA01G627820PF00901Orbi_VP514793.76.7
TkA01G627820PF26666DUF822115570.01715.9
TkA01G627820PF24487NDC80_loop16393.28.1
TkA01G627820PF30854Par-4_C17282.39.1
TkA01G627820PF04799Fzo_mitofusin18561.59.0
TkA01G627820PF30907IPGA1_CC34344.78.3
TkA01G627820PF16046FAM76812090.000321.0
TkA01G627820PF30907IPGA1_CC1232084.78.3
TkA01G627820PF15619Lebercilin1242130.710.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8GYX3Arabidopsis thalianasp|Q8GYX3|MP705_ARATH Microtubule-associated protein 70-538.900%Swiss-ProtMedium
Q8L7S4Arabidopsis thalianasp|Q8L7S4|MP702_ARATH Microtubule-associated protein 70-242.900%Swiss-ProtMedium
Q2QLI6Oryza sativa subsp. japonicasp|Q2QLI6|MP701_ORYSJ Microtubule-associated protein 70-146.200%Swiss-ProtMedium
Q6Z746Oryza sativa subsp. japonicasp|Q6Z746|MP702_ORYSJ Microtubule-associated protein 70-244.000%Swiss-ProtMedium
Q653N3Oryza sativa subsp. japonicasp|Q653N3|MP703_ORYSJ Microtubule-associated protein 70-341.900%Swiss-ProtMedium

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