TkA01G626860 | RubberDandelionOmics

Gene overview

TkA01G626860

Reference: TK1151 Chr: Chr01 Coordinates: 158223857-158228083 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1626 bp · TkA01G626860|TK1151|cDNA

TTCACCTCCCCTTTAAAGTAGCCAAGACCAATTCACTTTTGGCTTCACCCAATCCAATAAAAGCACTGGTGGGGCAACAGGCAACAGCGTACGGTACAAGTCAAGCTTCCGATTACAACCATTTCACCACCGCCATCCACGACGGGCAACGTAGCTTCCTTTCGCAGTCGGAGCCGTAAATCGGCCATGGCTGCCTCTGCCGGTGCTAAAACTCTACCCTCTTCCTCATCTCATTCTGCTGGTGCTCCTGATTCCTTCGA...

CDS

Download CDS FASTA

1050 bp · TkA01G626860|TK1151|CDS

ATGGCTGCCTCTGCCGGTGCTAAAACTCTACCCTCTTCCTCATCTCATTCTGCTGGTGCTCCTGATTCCTTCGATATGTCCACTGGATTTCCACCGAAGCCCTCACTCAAACCCGATCAACTCCGTGACTGCGTCCAAGCTCTCAAGTTTTTCAAGGAGAAATGGACTGATCAGTACTCACTTATCGAGAAAGAGTTCTCCATTTTGCAGGACCATAGGATGAGAGCTTCAGAAGCTAATAGCAGTTGCTCTGTGGCTAG...

Protein

Download Protein FASTA

349 aa · TkA01G626860|TK1151|PROTEIN

MAASAGAKTLPSSSSHSAGAPDSFDMSTGFPPKPSLKPDQLRDCVQALKFFKEKWTDQYSLIEKEFSILQDHRMRASEANSSCSVARLNVNCRKNRYSDVVPFDSNRIVLDPCKDHRSSAMGYINASLITAEANQSESVSRFIATQGPLPETFEDFWEMVLQNHCPAIVMLTRLIDHHRIQKCGDYFQAENGPRLFGNICTVTRKTTTTDSSLVLRHMEVNYQESREPPLPVLHIQYPEWPDHGVPDDTSAVRDIFRRLR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G626860`
TK1151 ID	TkA01G626860
OH-1004 ID	LXL04_000232
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	89.500
Protein coverage (%)	TK1151 100.000 / OH-1004 90.676 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G626860

Location Chr01:158223857-158228083 (+)

Description Similar to PTP1: Protein-tyrosine-phosphatase PTP1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g71860`	Protein-tyrosine-phosphatase that dephosphorylates and probably inhibits MPK6 in non-oxidative stress conditions.	ATMPK4, an Arabidopsis homolog of mitogen-activated protein kinase, is activated in vitro by AtMEK1 through threonine phosphorylation.2000 · DOI: 10.1104/pp.122.4.1301 MAP kinase phosphatase1 and protein tyrosine phosphatase1 are repressors of salicylic acid synthesis and SNC1-mediated responses in Arabidopsis.2009 · DOI: 10.1105/tpc.109.067678 Molecular characterization of a tyrosine-specific protein phosphatase encoded by a stress-responsive gene in Arabidopsis.1998 · DOI: 10.1105/tpc.10.5.849

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000232 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0001933 negative regulation of protein phosphorylation Biological Process

GO:0003084 positive regulation of systemic arterial blood pressure Biological Process

GO:0006470 protein dephosphorylation Biological Process

GO:0006952 defense response Biological Process

GO:0008285 negative regulation of cell population proliferation Biological Process

GO:0009966 regulation of signal transduction Biological Process

GO:0009968 negative regulation of signal transduction Biological Process

GO:0010460 positive regulation of heart rate Biological Process

GO:0010812 negative regulation of cell-substrate adhesion Biological Process

GO:0016311 dephosphorylation Biological Process

GO:0030036 actin cytoskeleton organization Biological Process

GO:0030100 regulation of endocytosis Biological Process

KEGG gene cross-reference

ath:AT1G71860

gga:395688

hsa:5770

rno:24697

rno:306281

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.604

Rank 1 · TkA01G626860 · TK1151

Cell membrane0.310

Rank 2 · TkA01G626860 · TK1151

Nucleus0.266

Rank 3 · TkA01G626860 · TK1151

Mitochondrion0.060

Rank 4 · TkA01G626860 · TK1151

Golgi apparatus0.052

Rank 5 · TkA01G626860 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00102Y_phosphatase91-332 aa

PF14566PTPlike_phytase145-163 aa

PF13350Y_phosphatase3233-286 aa

PF22785Tc-R-P241-286 aa

PF14566PTPlike_phytase241-285 aa

PF19953EACC1247-318 aa

PF22784PTP-SAK256-287 aa

PF00782DSPc259-287 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G626860	`PF00102`	Y_phosphatase	91	332	2e-71	241.1
TkA01G626860	`PF14566`	PTPlike_phytase	145	163	0.0032	18.3
TkA01G626860	`PF13350`	Y_phosphatase3	233	286	2.2e-05	25.3
TkA01G626860	`PF22785`	Tc-R-P	241	286	1.6e-07	32.5
TkA01G626860	`PF14566`	PTPlike_phytase	241	285	0.0032	18.3
TkA01G626860	`PF19953`	EACC1	247	318	0.064	14.0
TkA01G626860	`PF22784`	PTP-SAK	256	287	1.8e-05	25.6
TkA01G626860	`PF00782`	DSPc	259	287	0.00031	21.3
TkA01G626860	`PF22741`	PTP-NADK	264	292	0.0045	17.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O82656`	Arabidopsis thaliana	sp\|O82656\|PTP1_ARATH Protein-tyrosine-phosphatase PTP1	64.700%	Swiss-Prot	High

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