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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G623310
Reference: TK1151 Chr: Chr01 Coordinates: 157332494-157334706 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1042 bp · TkA01G623310|TK1151|cDNA

GAAAGAAACAACAACGTGGCAGGTGACCTCCGGTTTTCCCTTTGGTTCCTTCTTTTCACATCTCCTGCAAATTTCAAAAACAAGTGATCATTACTTGGGCAGCCATGTTAATGTCTGATCGGATGTTGCTCAAGGTCATTGTTCTTGGTGATAGTGGGGTCGGGAAGACATCTTTGATGAATCAATACGTTTATAACAGGTTCAACAAACAGTACAAGTCAACAATTGGTGCTGATTTTGTGACCAAGGAGCTGCATATA...

CDS

Download CDS FASTA

630 bp · TkA01G623310|TK1151|CDS

ATGTTAATGTCTGATCGGATGTTGCTCAAGGTCATTGTTCTTGGTGATAGTGGGGTCGGGAAGACATCTTTGATGAATCAATACGTTTATAACAGGTTCAACAAACAGTACAAGTCAACAATTGGTGCTGATTTTGTGACCAAGGAGCTGCATATAGACGAGAAGCTCGTCACGTTGCAAATTTGGGATACTGCTGGACAAGAGAGGTTTCACAGCCTTGGAGTTGCGTTTTATAGAGGGGCAGATTGTTGTGTGCTTGT...

Protein

Download Protein FASTA

209 aa · TkA01G623310|TK1151|PROTEIN

MLMSDRMLLKVIVLGDSGVGKTSLMNQYVYNRFNKQYKSTIGADFVTKELHIDEKLVTLQIWDTAGQERFHSLGVAFYRGADCCVLVYDVNIQKTFETLQTWHEEFLKQADPTDPDKFPFVLLGNKVDTDGGSSRAVSEKTAREWCALNGNIPYFETSAKENYNVDDAFLCVAKTALASEHPHPDVDEMYFQRIPTTISETEQERSCAC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G623310
TK1151 IDTkA01G623310
OH-1004 IDLXL04_000273
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.500
Protein coverage (%)TK1151 95.694 / OH-1004 82.278
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G623310
LocationChr01:157332494-157334706 (+)
DescriptionSimilar to Ras-related protein Rab7
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g09720 Intracellular vesicle trafficking and protein transport. No verified direct reference in this release
At1g22740 Intracellular vesicle trafficking and protein transport.
The Rab GTPase RabG3b functions in autophagy and contributes to tracheary element differentiation in Arabidopsis.2010 · DOI: 10.1111/j.1365-313x.2010.04315.x
At2g21880 Intracellular vesicle trafficking and protein transport. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000273 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0010089 xylem development Biological Process
GO:0010508 positive regulation of autophagy Biological Process
GO:0010623 programmed cell death involved in cell development Biological Process
GO:0015031 protein transport Biological Process
GO:1905177 tracheary element differentiation Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005773 vacuole Cellular Component
GO:0005774 vacuolar membrane Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005829 cytosol Cellular Component
KEGG gene cross-reference
ath:AT1G22740
ath:AT2G21880
ath:AT4G09720
gmx:100785104
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.503
Rank 1 · TkA01G623310 · TK1151
Golgi apparatus0.387
Rank 2 · TkA01G623310 · TK1151
Lysosome / Vacuole0.209
Rank 3 · TkA01G623310 · TK1151
Endoplasmic reticulum0.166
Rank 4 · TkA01G623310 · TK1151
Cell membrane0.137
Rank 5 · TkA01G623310 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05894Podovirus_Gp162-41 aa
PF05049IIGP5-28 aa
PF00025Arf6-140 aa
PF00735Septin9-56 aa
PF13479AAA_249-28 aa
PF00071Ras10-176 aa
PF08477Roc10-128 aa
PF04670Gtr1_RagA10-129 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G623310PF05894Podovirus_Gp162410.0513.7
TkA01G623310PF05049IIGP5280.2511.1
TkA01G623310PF00025Arf61408.2e-1245.7
TkA01G623310PF00735Septin9560.03114.3
TkA01G623310PF13479AAA_249280.1612.3
TkA01G623310PF00071Ras101768.3e-56188.8
TkA01G623310PF08477Roc101281.2e-34119.9
TkA01G623310PF04670Gtr1_RagA101291.1e-0732.3
TkA01G623310PF01926MMR_HSR1101051.7e-0628.8
TkA01G623310PF12775AAA_710390.02514.8
TkA01G623310PF10662PduV-EutP10460.0913.3
TkA01G623310PF09439SRPRB10700.2811.2
TkA01G623310PF03266NTPase_110720.3111.6
TkA01G623310PF03193RsgA_GTPase11300.007416.8
TkA01G623310PF20720nSTAND311410.008516.5
TkA01G623310PF13191AAA_1611360.01416.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q948K8Arabidopsis thalianasp|Q948K8|RAG3A_ARATH Ras-related protein RABG3a71.200%Swiss-ProtHigh
O04157Arabidopsis thalianasp|O04157|RAG3B_ARATH Ras-related protein RABG3b72.500%Swiss-ProtHigh
Q9SJ11Arabidopsis thalianasp|Q9SJ11|RABG2_ARATH Ras-related protein RABG268.200%Swiss-ProtHigh

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