TkA01G620640 | RubberDandelionOmics

Gene overview

TkA01G620640

Reference: TK1151 Chr: Chr01 Coordinates: 156603188-156604558 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1194 bp · TkA01G620640|TK1151|cDNA

ATGACACCGCCTTCGTCATCTACTCGAATTCATAAAGTTCCGAAGATATTGGTGAGCGAAACGAGCGACATATACGACAAGTACTATGTTCCCAAGGTTGTTTCCATCGGCCCATACCATTACAATAACCAGAAGTTCCAGTTAGTCGAGAAACTCAAGCCTGTTTTTACGAAGGAGCTAATGTCAAAGTGCACCGTGGACCTTAGCACGCTGTACATAAAGCTTGCGGAAGCTAACATGGTGCAAGATTTAACTGGAAG...

CDS

Download CDS FASTA

1194 bp · TkA01G620640|TK1151|CDS

ATGACACCGCCTTCGTCATCTACTCGAATTCATAAAGTTCCGAAGATATTGGTGAGCGAAACGAGCGACATATACGACAAGTACTATGTTCCCAAGGTTGTTTCCATCGGCCCATACCATTACAATAACCAGAAGTTCCAGTTAGTCGAGAAACTCAAGCCTGTTTTTACGAAGGAGCTAATGTCAAAGTGCACCGTGGACCTTAGCACGCTGTACATAAAGCTTGCGGAAGCTAACATGGTGCAAGATTTAACTGGAAG...

Protein

Download Protein FASTA

397 aa · TkA01G620640|TK1151|PROTEIN

MTPPSSSTRIHKVPKILVSETSDIYDKYYVPKVVSIGPYHYNNQKFQLVEKLKPVFTKELMSKCTVDLSTLYIKLAEANMVQDLTGSCRELRSHQIVFIQQDLFLLENQIPFKVVNEAIKLIKLDRRAREKIESFFTDNILVPGKQKRRWFGCKNGSIQNDQNYAQESLTSIADDHLLHRLHSSLTQTTHIRQPSAKNTTSKNVNELVDVGIRFKPSSVMSLVHVEFVRRWWFLADVELPPITVDDSTKPMLLNLIAYEM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G620640`
TK1151 ID	TkA01G620640
OH-1004 ID	LXL04_000312
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	71.600
Protein coverage (%)	TK1151 100.000 / OH-1004 93.571 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G620640

Location Chr01:156603188-156604558 (+)

Description Similar to At3g47200: UPF0481 protein At3g47200

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g47200`	UPF0481 protein At3g47200.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_000312 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT3G02645

ath:AT3G47200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.873

Rank 1 · TkA01G620640 · TK1151

Endoplasmic reticulum0.084

Rank 2 · TkA01G620640 · TK1151

Cytoplasm0.078

Rank 3 · TkA01G620640 · TK1151

Nucleus0.043

Rank 4 · TkA01G620640 · TK1151

Lysosome / Vacuole0.027

Rank 5 · TkA01G620640 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03140DUF24710-77 aa

PF03140DUF24794-368 aa

PF01477PLAT108-166 aa

PF01477PLAT219-239 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G620640	`PF03140`	DUF247	10	77	6.9e-69	233.8
TkA01G620640	`PF03140`	DUF247	94	368	6.9e-69	233.8
TkA01G620640	`PF01477`	PLAT	108	166	0.19	13.2
TkA01G620640	`PF01477`	PLAT	219	239	0.19	13.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SD53`	Arabidopsis thaliana	sp\|Q9SD53\|Y3720_ARATH UPF0481 protein At3g47200	23.900%	Swiss-Prot	Low

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