TkA01G620600 | RubberDandelionOmics

Gene overview

TkA01G620600

Reference: TK1151 Chr: Chr01 Coordinates: 156586705-156591874 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2233 bp · TkA01G620600|TK1151|cDNA

CAATGGTACAATTTTGTTGCAAATCTGGCGATAAGCCCTTCGACATAGTGAAAGCTCAAGCGGAGGCGCCGTGCAGCAGATGAATCACCGGAAACATCAATACAAATGTTGCGATCTCTCCGAGTCAAGCGATCCCTCCAATCCTTTGTCAATAACCGCAAAATTTCACATTTAGATCACACCCTCGAGCCCCTATCTTCTTTCCGCACAGCTAAAACCCCTCAAATAAACCTCATACGTCACTTTTCTTCATCATCTCC...

CDS

Download CDS FASTA

1854 bp · TkA01G620600|TK1151|CDS

ATGTTGCGATCTCTCCGAGTCAAGCGATCCCTCCAATCCTTTGTCAATAACCGCAAAATTTCACATTTAGATCACACCCTCGAGCCCCTATCTTCTTTCCGCACAGCTAAAACCCCTCAAATAAACCTCATACGTCACTTTTCTTCATCATCTCCACCACCGCCAACCCCGCCGCCGCTTTCCGCGGCGTCATCTACTTCGAAAGAACTTCGAAGATACCTCGGATACTCCGCACTCCTCCTCAGCTGCGCCGTCGCCAC...

Protein

Download Protein FASTA

617 aa · TkA01G620600|TK1151|PROTEIN

MLRSLRVKRSLQSFVNNRKISHLDHTLEPLSSFRTAKTPQINLIRHFSSSSPPPPTPPPLSAASSTSKELRRYLGYSALLLSCAVATYYSFPFPENAKHKKAQLFRYAPLPDDLHTVANWSGTHEVQTRVFHQPETLEELETIVNDANEKKQKIRPVGSGLSPNGIGLARGGMVNLALLDKVLEVNKEKKTVRVQAGIRVQQLVDAIKDYGITLQNFASIREQQIGGIVQVGAHGTGAKLPPIDEQVISMKLVTPGKGTI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G620600`
TK1151 ID	TkA01G620600
OH-1004 ID	LXL04_000315
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.400
Protein coverage (%)	TK1151 100.000 / OH-1004 94.777 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G620600

Location Chr01:156586705-156591874 (-)

Description Similar to L-galactono-1,4-lactone dehydrogenase, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g47930`	Involved in the biosynthesis of ascorbate.	L-galactono-1,4-lactone dehydrogenase is required for the accumulation of plant respiratory complex I.2008 · DOI: 10.1074/jbc.m805320200

Rice

Reference gene ID	Possible function	Papers / DOI
`Os11g0143500`	Involved in the biosynthesis of ascorbic acid.	No verified direct reference in this release
`Os12g0139600`	Involved in the biosynthesis of ascorbic acid.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000315 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0019853 L-ascorbic acid biosynthetic process Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0031966 mitochondrial membrane Cellular Component

GO:0003885 D-arabinono-1,4-lactone oxidase activity Molecular Function

GO:0016491 oxidoreductase activity Molecular Function

GO:0016633 galactonolactone dehydrogenase activity Molecular Function

GO:0050105 L-gulonolactone oxidase activity Molecular Function

GO:0050660 flavin adenine dinucleotide binding Molecular Function

GO:0071949 FAD binding Molecular Function

GO:0080049 L-gulono-1,4-lactone dehydrogenase activity Molecular Function

KEGG gene cross-reference

ag:CAB09796

ath:AT3G47930

dosa:Os11g0143500

dosa:Os12g0139600

ssc:396759

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.900

Rank 1 · TkA01G620600 · TK1151

Cytoplasm0.083

Rank 2 · TkA01G620600 · TK1151

Nucleus0.046

Rank 3 · TkA01G620600 · TK1151

Plastid0.037

Rank 4 · TkA01G620600 · TK1151

Cell membrane0.034

Rank 5 · TkA01G620600 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01565FAD_binding_4130-260 aa

PF20297MSSS181-198 aa

PF20297MSSS276-287 aa

PF04030ALO287-607 aa

PF20297MSSS562-571 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G620600	`PF01565`	FAD_binding_4	130	260	2.2e-27	96.2
TkA01G620600	`PF20297`	MSSS	181	198	0.22	11.9
TkA01G620600	`PF20297`	MSSS	276	287	0.22	11.9
TkA01G620600	`PF04030`	ALO	287	607	1.1e-18	68.6
TkA01G620600	`PF20297`	MSSS	562	571	0.22	11.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SU56`	Arabidopsis thaliana	sp\|Q9SU56\|GLDH_ARATH L-galactono-1,4-lactone dehydrogenase, mitochondrial	73.600%	Swiss-Prot	High
`Q2RAP0`	Oryza sativa subsp. japonica	sp\|Q2RAP0\|GLDH1_ORYSJ L-galactono-1,4-lactone dehydrogenase 1, mitochondrial	72.200%	Swiss-Prot	High
`Q2QXY1`	Oryza sativa subsp. japonica	sp\|Q2QXY1\|GLDH2_ORYSJ L-galactono-1,4-lactone dehydrogenase 2, mitochondrial	71.400%	Swiss-Prot	High

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