TkA01G613750 | RubberDandelionOmics

Gene overview

TkA01G613750

Reference: TK1151 Chr: Chr01 Coordinates: 154747597-154750619 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2062 bp · TkA01G613750|TK1151|cDNA

AAAGCCACTCCGTTAACAAAGGGTCATTGAATCACTTGCTTATTTTCAACACATGTCAATACAAGTAAAATAAGGAAAAATAGCACACGAGTCTCCGGGATCCGGCGTTACAAAGCTGATACAGAACCACTCTATACCCTGCACACAAGACCGGCCGGCGGAATTCAATTTCAAAAGAAAATGCAGAATCCAGACGACGTCCGCAACCTGCCGATCGACATCGCTTTTGCTCGTCTTGGTGAATGGCTGGTTGATCGGAA...

CDS

Download CDS FASTA

1599 bp · TkA01G613750|TK1151|CDS

ATGCAGAATCCAGACGACGTCCGCAACCTGCCGATCGACATCGCTTTTGCTCGTCTTGGTGAATGGCTGGTTGATCGGAAGAGAATACCATCGGATTGGAGAAAACGTGTAGCAGTTGTCAAAGCCAAAATATCTGCCGCTTATCAGTCTCTTCCTAAGGACGTTGATCCTTTCTTCCAAACCCTAGACCTCGATGGGATTGGATACCTAGAAGCCAAGAAAATATATGATATTCTTCTGAAATCAACTCCAGAAAGCCG...

Protein

Download Protein FASTA

532 aa · TkA01G613750|TK1151|PROTEIN

MQNPDDVRNLPIDIAFARLGEWLVDRKRIPSDWRKRVAVVKAKISAAYQSLPKDVDPFFQTLDLDGIGYLEAKKIYDILLKSTPESRNIFGRLSGDAGAWEAIVRAFEKDHIYLGEAAQIMVQNVNYEIPYHKKLVQRTQQQLAELERKETDIKRNAALSATKYTEACQELGLQGLNVKLELLETATTSLPSTFTKMLEILNSDSVSQAIEFYSNFVKDAHTEKDKVPETVLPNLKDIIENPPLLEVSAASEVIATVNSG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G613750`
TK1151 ID	TkA01G613750
OH-1004 ID	LXL04_000407
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.700
Protein coverage (%)	TK1151 100.000 / OH-1004 97.288 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G613750

Location Chr01:154747597-154750619 (-)

Description Similar to At5g06830: CDK5RAP3-like protein

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g06830`	Substrate adapter of E3 ligase complexes mediating ufmylation, the covalent attachment of the ubiquitin-like modifier UFM1 to substrate proteins, and which is involved in various processes, such as ribosome recycling and reticulophagy (also called ER-phagy).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000407 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity Biological Process

GO:0001933 negative regulation of protein phosphorylation Biological Process

GO:0007095 mitotic G2 DNA damage checkpoint signaling Biological Process

GO:0007346 regulation of mitotic cell cycle Biological Process

GO:0008283 cell population proliferation Biological Process

GO:0010921 regulation of phosphatase activity Biological Process

GO:0030968 endoplasmic reticulum unfolded protein response Biological Process

GO:0031398 positive regulation of protein ubiquitination Biological Process

GO:0032790 ribosome disassembly Biological Process

GO:0034976 response to endoplasmic reticulum stress Biological Process

GO:0042177 negative regulation of protein catabolic process Biological Process

GO:0043407 negative regulation of MAP kinase activity Biological Process

KEGG gene cross-reference

ath:AT5G06830

hsa:80279

mmu:80280

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.521

Rank 1 · TkA01G613750 · TK1151

Cytoplasm0.455

Rank 2 · TkA01G613750 · TK1151

Golgi apparatus0.076

Rank 3 · TkA01G613750 · TK1151

Lysosome / Vacuole0.055

Rank 4 · TkA01G613750 · TK1151

Cell membrane0.054

Rank 5 · TkA01G613750 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05600CDK5RAP38-521 aa

PF15821DUF4709121-170 aa

PF12308Noelin-1122-155 aa

PF15821DUF4709344-397 aa

PF17903KH_KRR1_1st412-455 aa

PF12308Noelin-1422-471 aa

PF15613WSD443-476 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G613750	`PF05600`	CDK5RAP3	8	521	1.5e-159	532.8
TkA01G613750	`PF15821`	DUF4709	121	170	3.2	8.9
TkA01G613750	`PF12308`	Noelin-1	122	155	0.057	14.3
TkA01G613750	`PF15821`	DUF4709	344	397	3.2	8.9
TkA01G613750	`PF17903`	KH_KRR1_1st	412	455	0.077	13.9
TkA01G613750	`PF12308`	Noelin-1	422	471	0.057	14.3
TkA01G613750	`PF15613`	WSD	443	476	0.32	11.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FG23`	Arabidopsis thaliana	sp\|Q9FG23\|CK5P3_ARATH CDK5RAP3 protein homolog	61.900%	Swiss-Prot	High

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