TkA01G611860 | RubberDandelionOmics

Gene overview

TkA01G611860

Reference: TK1151 Chr: Chr01 Coordinates: 154260714-154263242 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1469 bp · TkA01G611860|TK1151|cDNA

CTAGAACCTCATTTATATAAGTCTCCTTTTGTCCGTAGATAGTTCCCATGTTATTACAGATTTTCTAGAGAGAGAGAGTGCGTGTTTCTAGAGAGAGAAAGTATGGAACTAGCTTTGAGCTTGGGAGATACTCCCAAACCATTTTCATTGTTGGATCATCACAGCAGATCTCAGCAGCAGAAGATGAAGGATTTAGGGTTTTGCATGGGGTTAGGCGGTAGTAAAAACCTTGAAGATCTTCATTTCATGAACACCATGAG...

CDS

Download CDS FASTA

1089 bp · TkA01G611860|TK1151|CDS

ATGGAACTAGCTTTGAGCTTGGGAGATACTCCCAAACCATTTTCATTGTTGGATCATCACAGCAGATCTCAGCAGCAGAAGATGAAGGATTTAGGGTTTTGCATGGGGTTAGGCGGTAGTAAAAACCTTGAAGATCTTCATTTCATGAACACCATGAGAGAGAAAGATGATGATGATGATGATGATGATGATGCTCATCAGAAAACTGAGGACAAAAAAAGTTCTTCTTCATCGGATCCACCACCACCACTGCAACTTGA...

Protein

Download Protein FASTA

362 aa · TkA01G611860|TK1151|PROTEIN

MELALSLGDTPKPFSLLDHHSRSQQQKMKDLGFCMGLGGSKNLEDLHFMNTMREKDDDDDDDDDAHQKTEDKKSSSSSDPPPPLQLDLLPFSPVLRSVPPPPPPSQRSFPWLSKNLIAEMGSQNKPVQVLDVKPMAGVSDHQDNMEETAGGESSPNNSNSGTSSFQMDFSSIFKSSNSGRSFHSRKRDLELATVNLELVEATTESDQRASSRGGGMSDEDENGLTRKKLRLTKEQSAFLEDSFKEHSTLNPKQKQALAKQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G611860`
TK1151 ID	TkA01G611860
OH-1004 ID	LXL04_000431
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G611860

Location Chr01:154260714-154263242 (-)

Description Similar to HAT14: Homeobox-leucine zipper protein HAT14

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g06710`	Probable transcription factor.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2Z1U1`	Probable transcription factor.	No verified direct reference in this release
`Os09g0447000`	Probable transcription factor.	No verified direct reference in this release
`UniProt: A2YW03`	Probable transcription factor.	No verified direct reference in this release
`Os08g0465000`	Probable transcription factor.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000431 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0043565 sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

ath:AT5G06710

dosa:Os09g0447000

osa:9271357

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.982

Rank 1 · TkA01G611860 · TK1151

Cytoplasm0.072

Rank 2 · TkA01G611860 · TK1151

Cell membrane0.026

Rank 3 · TkA01G611860 · TK1151

Endoplasmic reticulum0.018

Rank 4 · TkA01G611860 · TK1151

Plastid0.010

Rank 5 · TkA01G611860 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26917Phage_APSE1_p4939-60 aa

PF19776DUF6262113-139 aa

PF00046Homeodomain226-280 aa

PF24627PUMA_CC226-244 aa

PF00170bZIP_1228-235 aa

PF05920Homeobox_KN251-278 aa

PF19776DUF6262251-312 aa

PF02183HALZ252-262 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G611860	`PF26917`	Phage_APSE1_p49	39	60	0.3	12.1
TkA01G611860	`PF19776`	DUF6262	113	139	0.21	12.5
TkA01G611860	`PF00046`	Homeodomain	226	280	3.1e-16	59.6
TkA01G611860	`PF24627`	PUMA_CC	226	244	0.044	14.5
TkA01G611860	`PF00170`	bZIP_1	228	235	1.3	9.9
TkA01G611860	`PF05920`	Homeobox_KN	251	278	6.8e-05	23.3
TkA01G611860	`PF19776`	DUF6262	251	312	0.21	12.5
TkA01G611860	`PF02183`	HALZ	252	262	1.1e-10	42.2
TkA01G611860	`PF00170`	bZIP_1	274	313	1.3	9.9
TkA01G611860	`PF24627`	PUMA_CC	277	313	0.044	14.5
TkA01G611860	`PF06156`	YabA	278	316	0.019	16.3
TkA01G611860	`PF02183`	HALZ	282	316	1.1e-10	42.2
TkA01G611860	`PF26917`	Phage_APSE1_p49	289	312	0.3	12.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P46665`	Arabidopsis thaliana	sp\|P46665\|HAT14_ARATH Homeobox-leucine zipper protein HAT14	48.500%	Swiss-Prot	Medium
`A2Z1U1`	Oryza sativa subsp. indica	sp\|A2Z1U1\|HOX11_ORYSI Homeobox-leucine zipper protein HOX11	91.400%	Swiss-Prot	Low
`Q67UE2`	Oryza sativa subsp. japonica	sp\|Q67UE2\|HOX11_ORYSJ Homeobox-leucine zipper protein HOX11	91.400%	Swiss-Prot	Low
`A2YW03`	Oryza sativa subsp. indica	sp\|A2YW03\|HOX27_ORYSI Homeobox-leucine zipper protein HOX27	90.500%	Swiss-Prot	Low
`Q6YPD0`	Oryza sativa subsp. japonica	sp\|Q6YPD0\|HOX27_ORYSJ Homeobox-leucine zipper protein HOX27	90.500%	Swiss-Prot	Low

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