TkA01G611220 | RubberDandelionOmics

Gene overview

TkA01G611220

Reference: TK1151 Chr: Chr01 Coordinates: 154108914-154111563 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1770 bp · TkA01G611220|TK1151|cDNA

CAGTTTCTGGTCTCAAATAACGCATCGGCGGCGAAGCCTTTTCTCATTCTTAATTACTTTTAATTCAACTCCATCACCGTCGTTTACCGAGGGATATATCAATTTTATCACACAGACGCTCACGGTCGCACTGTACCATACTTTATTCCTGAAAAATTCACGGAGATGGTGCATGTCTACTATTGCTCTCTTGGATCCTGACCTACTTCTGCAGTGTAAGCCAATTTCACATCTAATTCACACCGAAGCAAAACCCTTTC...

CDS

Download CDS FASTA

1167 bp · TkA01G611220|TK1151|CDS

ATGTACACCCCACTCCTCCAAATCCACTCGATCGCCACCAATTTCACATCCCAATCACACTCTTCTCAAAATCCCCTTATTTTCTTCGTTCACCAATTTCCCCAAATCCCAAAGTTTCCCAAGTATACTTATTCATCCCTTTCGTACAACCGCAAAACCCTGTTTAAAACCCGGATAAAATGTACAGCAAACAGCGATTCTAGTCCAGCAAAATGGGAGGGACTGTTACCAAAAAATATTATCTCAGCTGAGAAAATCCT...

Protein

Download Protein FASTA

388 aa · TkA01G611220|TK1151|PROTEIN

MYTPLLQIHSIATNFTSQSHSSQNPLIFFVHQFPQIPKFPKYTYSSLSYNRKTLFKTRIKCTANSDSSPAKWEGLLPKNIISAEKILRSIAGATSSPICQFISSPTTFLHSVDPRIKLVWLLVLVVLPARSHIYMRFGLISFLALLSAWMLPREVWMDQLGRVALLSGILFIMIGLGADGAPMVVQSRTPPPSMMQLPNIPPSFQGYSYLLFKLGPLQFTRKGLSIASTSACLTFTIFQSASLCLTTTTPEQLAFALQWF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G611220`
TK1151 ID	TkA01G611220
OH-1004 ID	LXL04_000444
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G611220

Location Chr01:154108914-154111563 (-)

Description Similar to ABCI12: Protein ABCI12, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g21580`	Protein ABCI12, chloroplastic.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000444 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0022857 transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ana:alr0484

ath:AT3G21580

cce:Ccel_0792

esi:Exig_0127

lfr:LC40_0952

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.973

Rank 1 · TkA01G611220 · TK1151

Mitochondrion0.024

Rank 2 · TkA01G611220 · TK1151

Nucleus0.018

Rank 3 · TkA01G611220 · TK1151

Cytoplasm0.011

Rank 4 · TkA01G611220 · TK1151

Cell membrane0.010

Rank 5 · TkA01G611220 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02361CbiQ107-347 aa

PF22865MgtS-like138-150 aa

PF22865MgtS-like294-301 aa

PF22865MgtS-like367-379 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G611220	`PF02361`	CbiQ	107	347	4.8e-17	63.0
TkA01G611220	`PF22865`	MgtS-like	138	150	6.0	7.6
TkA01G611220	`PF22865`	MgtS-like	294	301	6.0	7.6
TkA01G611220	`PF22865`	MgtS-like	367	379	6.0	7.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q944H2`	Arabidopsis thaliana	sp\|Q944H2\|AB12I_ARATH Protein ABCI12, chloroplastic	62.200%	Swiss-Prot	High

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