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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G607190
Reference: TK1151 Chr: Chr01 Coordinates: 152997705-153001074 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1461 bp · TkA01G607190|TK1151|cDNA

CCGATATCATTTTTATCAGTTCCCGGTTCGAAACGCCTTGACGACGGAGAGATGGGTGCATTGAAATCTCTAGAGGAGGACTATGCCATAATTGACGCCAAGTTTCTTCAATTCTGTGCATCTCGCGGCATTTTTTCCGCGTTTTATCGAGTGGATCATAGATGAAGTAGCTGGTCATTGCAGGCTATGGCTCTTGCATTTAACGTCTTTAACGTGTAGCAATACGTGGATCAGTTCGTTTAGGGCTGTTTTTTTCGTCA...

CDS

Download CDS FASTA

948 bp · TkA01G607190|TK1151|CDS

ATGGGTGCATTGAAATCTCTAGAGGAGGACTATGCCATAATTGACGCCAAGTTTCTTCAATTCTGTGCATCTCGCGGCATTTTTTCCGTTGAAGATTTCTTAGTGCATGATGTGTACATGTTGATGGCTTCTGCAGAGAAACTCTCTAATTCAGATAGATTAAAACAGGGTATCAACCAACTCATCTCAATAACAGAAACCTACCATCAACCATGGATGAATGGTCTGATGTTATTGGAAGATAGAGAACAGAATAAACA...

Protein

Download Protein FASTA

315 aa · TkA01G607190|TK1151|PROTEIN

MGALKSLEEDYAIIDAKFLQFCASRGIFSVEDFLVHDVYMLMASAEKLSNSDRLKQGINQLISITETYHQPWMNGLMLLEDREQNKQYISTGCESFDVLLQGGLHEGHVTELVGPSSSGKTQVCFQVASNVAMKRGNVVFFDSGNSFSPTRIKQMVTHISGSEENTVNEVVHQSLRNIKHHAVFDIYTLLDLLHQLNTNPKSQKPHQIQLIIVDSISSLISPILGGSNTQGHALMVSVGYLLKQLADQHNIAVLVTNHMV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G607190
TK1151 IDTkA01G607190
OH-1004 IDLXL04_018024
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)25.200
Protein coverage (%)TK1151 65.397 / OH-1004 30.218
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G607190
LocationChr01:152997705-153001074 (+)
DescriptionSimilar to XRCC3: DNA repair protein XRCC3 homolog
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g07745 Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018024 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000722 telomere maintenance via recombination Biological Process
GO:0000724 double-strand break repair via homologous recombination Biological Process
GO:0006281 DNA repair Biological Process
GO:0006302 double-strand break repair Biological Process
GO:0006310 DNA recombination Biological Process
GO:0006508 proteolysis Biological Process
GO:0006974 DNA damage response Biological Process
GO:0010824 regulation of centrosome duplication Biological Process
GO:0015074 DNA integration Biological Process
GO:0031297 replication fork processing Biological Process
GO:0036297 interstrand cross-link repair Biological Process
GO:0045003 double-strand break repair via synthesis-dependent strand annealing Biological Process
KEGG gene cross-reference
ath:AT5G57450
bta:768244
hsa:7517
mmu:74335
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.548
Rank 1 · TkA01G607190 · TK1151
Cytoplasm0.382
Rank 2 · TkA01G607190 · TK1151
Mitochondrion0.126
Rank 3 · TkA01G607190 · TK1151
Cell membrane0.035
Rank 4 · TkA01G607190 · TK1151
Peroxisome0.026
Rank 5 · TkA01G607190 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10483Elong_Iki151-70 aa
PF00154RecA_N75-155 aa
PF05625PAXNEB86-108 aa
PF08423Rad5188-276 aa
PF06745ATPase89-278 aa
PF03796DnaB_C89-256 aa
PF13481AAA_2598-258 aa
PF00005ABC_tran103-166 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G607190PF10483Elong_Iki151700.2811.4
TkA01G607190PF00154RecA_N751551.8e-0938.2
TkA01G607190PF05625PAXNEB861080.0513.4
TkA01G607190PF08423Rad51882761e-1971.5
TkA01G607190PF06745ATPase892781.2e-0835.4
TkA01G607190PF03796DnaB_C892563.4e-0730.7
TkA01G607190PF13481AAA_25982589.7e-0935.8
TkA01G607190PF00005ABC_tran1031660.01117.0
TkA01G607190PF13401AAA_221092180.01416.4
TkA01G607190PF01637ATPase_21122550.0008519.9
TkA01G607190PF13479AAA_241122260.002518.2
TkA01G607190PF04851ResIII1122140.0116.4
TkA01G607190PF02224Cytidylate_kin1141830.1312.7
TkA01G607190PF01656CbiA1162060.2212.2
TkA01G607190PF10483Elong_Iki11341800.2811.4
TkA01G607190PF05625PAXNEB1862560.0513.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LQQ2Arabidopsis thalianasp|Q9LQQ2|RA51D_ARATH DNA repair protein RAD51 homolog 451.700%Swiss-ProtHigh

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