Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1345 bp · TkA01G604020|TK1151|cDNA
AATTGGACTTTAAAAATGAACTCTCAGAAGTGAAATCCCCCGTCAAACACCTTCTCACACAATCGCACACCTGAGCGAAGCCCTAAGTAAAACCCTAAATCTCCACTCGGAAACCTATCGGCACATCTTCATCTACGATCTCATAAATCGGATTTTTGATGCTGCTTACTCATACCTTGTGTCCTATGTTAAAAAATTAAAGTTCGGAGCCCTCGGAAGGTTGATACGGCAAGGTCACCAGGATGTTCAATCAGTGCTGG...
609 bp · TkA01G604020|TK1151|CDS
ATGAAAGGTGTCAAATATTTGGATTGCTATGGAGTTGACAATGCTTTGGTGCGTGTTGGTGATCCTACTTTCTTGGGCTATTTCATTGACAAGGGTGTAACTCCCGCTGTTAAAGTTGTGCGTAAGGCATACCCTCAAGAGAAAGTTGGTGTATTTGTACGGCGTGGTAAAGGACGGCCTGTAACTGTAGTTGAATACATTGAGTTGGATCAGTCACTCGCTAGTGAAATTAATCAAGGAATTGGCCGACTCAGATATTG...
Protein
Download Protein FASTA202 aa · TkA01G604020|TK1151|PROTEIN
MKGVKYLDCYGVDNALVRVGDPTFLGYFIDKGVTPAVKVVRKAYPQEKVGVFVRRGKGRPVTVVEYIELDQSLASEINQGIGRLRYCWSNEACEEAIVAKYGDDTSCYPLLDSQIWLEVSGGKKEGCVFGFGSISDPESFLTGTSSTATFREKKAAKMEAKAAEMEAKTAEMEAKAAKMDVKYHKMCEELDAKAAALEVKQK
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA01G604020 |
|---|---|
| TK1151 ID | TkA01G604020 |
| OH-1004 ID | LXL04_014256 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 92.200 |
| Protein coverage (%) | TK1151 44.554 / OH-1004 18.293Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA01G604020 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:152193676-152197902 (-) | |||||||||
| Description | Similar to GLCNAC1PUT1: UDP-N-acetylglucosamine diphosphorylase 1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006011 UDP-alpha-D-glucose metabolic process Biological Process GO:0006047 UDP-N-acetylglucosamine metabolic process Biological Process GO:0006048 UDP-N-acetylglucosamine biosynthetic process Biological Process GO:0009553 embryo sac development Biological Process GO:0009555 pollen development Biological Process GO:0009793 embryo development ending in seed dormancy Biological Process GO:0019276 UDP-N-acetylgalactosamine metabolic process Biological Process GO:0032481 positive regulation of type I interferon production Biological Process GO:0140374 antiviral innate immune response Biological Process GO:0005654 nucleoplasm Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT1G31070 ath:AT2G35020 dre:393264 hsa:6675 mmu:107652 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01704UDPGP2-69 aaPF09281Taq-exonuc21-42 aaPF10211Ax_dynein_light52-79 aaPF21408MTR4-like_stalk63-74 aaPF09281Taq-exonuc88-99 aaPF10211Ax_dynein_light146-194 aaPF09281Taq-exonuc150-197 aaPF05600CDK5RAP3152-193 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA01G604020 | PF01704 | UDPGP | 2 | 69 | 0.00051 | 19.6 |
| TkA01G604020 | PF09281 | Taq-exonuc | 21 | 42 | 0.87 | 10.3 |
| TkA01G604020 | PF10211 | Ax_dynein_light | 52 | 79 | 0.22 | 12.3 |
| TkA01G604020 | PF21408 | MTR4-like_stalk | 63 | 74 | 1.6 | 9.7 |
| TkA01G604020 | PF09281 | Taq-exonuc | 88 | 99 | 0.87 | 10.3 |
| TkA01G604020 | PF10211 | Ax_dynein_light | 146 | 194 | 0.22 | 12.3 |
| TkA01G604020 | PF09281 | Taq-exonuc | 150 | 197 | 0.87 | 10.3 |
| TkA01G604020 | PF05600 | CDK5RAP3 | 152 | 193 | 0.082 | 12.4 |
| TkA01G604020 | PF30882 | CCDC146_CC_N | 152 | 202 | 0.22 | 11.5 |
| TkA01G604020 | PF21408 | MTR4-like_stalk | 152 | 192 | 1.6 | 9.7 |
| TkA01G604020 | PF16526 | CLZ | 153 | 197 | 0.8 | 10.9 |
| TkA01G604020 | PF01704 | UDPGP | 157 | 186 | 0.00051 | 19.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.