TkA01G601990 | RubberDandelionOmics

Gene overview

TkA01G601990

Reference: TK1151 Chr: Chr01 Coordinates: 151612738-151615825 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2810 bp · TkA01G601990|TK1151|cDNA

TGGGCAGTCAAAGTTAGTTTGGTGAAGTGGCTTGAGTTTCATTCATTTATGATTTATCATTCTTTACCTTCTTTGTTTTTTCTCGTCAACTAAGAAAAATAAAGTCAAACCAAAGAACCAGCGACCATTCAACAACCACGTCGACAGACTATAGCCGGTGAAGCCGACGTTCAGCTGCATCCTCGATTCTTCGTCGTCACGGCTTATAAATGTAAATTCACAGCTCCATTTCACACCCTTTCTGTCAAACCAGATCTCAT...

CDS

Download CDS FASTA

2172 bp · TkA01G601990|TK1151|CDS

ATGCTAATGGAACCGCGGCACGATGAATTCTCTGATTACATTAATAGTTTCTCTTTGGATGACGAGAGTATCTTGCCCATCTTCGGGCAGTCTCCAGGCCTTGCAAATGGATACAGATTCAGAGAAGAGCCTCTAGATCTCAGTTTTCTAGAAACTTCTAACACGGAATCGAATTCTGGCCCGTATACTTCCGATTCGTCTTCACGCATGTCCACACAAGCCGACTCTCCCGACGACTTTTCCGATTGCGTTTTCAGGTA...

Protein

Download Protein FASTA

723 aa · TkA01G601990|TK1151|PROTEIN

MLMEPRHDEFSDYINSFSLDDESILPIFGQSPGLANGYRFREEPLDLSFLETSNTESNSGPYTSDSSSRMSTQADSPDDFSDCVFRYINQILVEEDMGVKQSMFHDPLALQQTEKSFYEALVEEYPPPTKIPDDNLFSSASDYSTNSSNSTDSQWPGGDSHETKSSVPETPSLEYPLLSSFGSTTSVTNDSYPTLDSMINTHIIENIFTDNESIMQFNRGMQEASKFLPPSKPLVIDLDKYNLPSNPRHTPTTLPIKQEI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G601990`
TK1151 ID	TkA01G601990
OH-1004 ID	LXL04_000580
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.400
Protein coverage (%)	TK1151 90.456 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G601990

Location Chr01:151612738-151615825 (+)

Description Similar to SCL14: Scarecrow-like protein 14

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g07530`	Probable transcription factor involved in plant development.	No verified direct reference in this release
`At2g29060`	Probable transcription factor involved in plant development.	No verified direct reference in this release
`At2g29065`	Probable transcription factor involved in plant development.	No verified direct reference in this release
`At1g07520`	Probable transcription factor involved in plant development.	No verified direct reference in this release
`At2g37650`	Probable transcription factor involved in plant development.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000580 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009410 response to xenobiotic stimulus Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0080183 response to photooxidative stress Biological Process

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0043565 sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G07520

ath:AT1G07530

ath:AT2G29060

ath:AT2G29065

ath:AT2G37650

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.796

Rank 1 · TkA01G601990 · TK1151

Cytoplasm0.286

Rank 2 · TkA01G601990 · TK1151

Cell membrane0.035

Rank 3 · TkA01G601990 · TK1151

Endoplasmic reticulum0.030

Rank 4 · TkA01G601990 · TK1151

Plastid0.025

Rank 5 · TkA01G601990 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03514GRAS354-720 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G601990	`PF03514`	GRAS	354	720	2.4e-103	346.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9XE58`	Arabidopsis thaliana	sp\|Q9XE58\|SCL14_ARATH Scarecrow-like protein 14	47.000%	Swiss-Prot	Medium
`P0C883`	Arabidopsis thaliana	sp\|P0C883\|SCL33_ARATH Scarecrow-like protein 33	45.400%	Swiss-Prot	Medium
`P0C884`	Arabidopsis thaliana	sp\|P0C884\|SCL34_ARATH Scarecrow-like protein 34	43.400%	Swiss-Prot	Medium
`Q3EDH0`	Arabidopsis thaliana	sp\|Q3EDH0\|SCL31_ARATH Scarecrow-like protein 31	42.400%	Swiss-Prot	Medium
`O80933`	Arabidopsis thaliana	sp\|O80933\|SCL9_ARATH Scarecrow-like protein 9	39.700%	Swiss-Prot	Medium

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