TkA01G599560 | RubberDandelionOmics

Gene overview

TkA01G599560

Reference: TK1151 Chr: Chr01 Coordinates: 150996185-150999768 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2839 bp · TkA01G599560|TK1151|cDNA

AAAAAAAAAAAAAACTGCTGTTGATGTGTTGTCCACTTGTGCTTTTAAATAAACCGAAAAGGTCCCACCTAGTCGTCAAGACGTCAACCACTCACCATCCACTGCCATCTCCTCCCTCTCTTTCCCGATCATCGCCATCACACCAACACCGACGTGTTTTGCTTCACACAGTCGCCGTTATCCTTTTCCGGTTCCGTAACAATGGCAGACATGATCAATGTCGTTTACAAGAACGCAAACGAACCGATCGAAGCTAGGGT...

CDS

Download CDS FASTA

1830 bp · TkA01G599560|TK1151|CDS

ATGGCAGACATGATCAATGTCGTTTACAAGAACGCAAACGAACCGATCGAAGCTAGGGTAAAAGATTTACTCTCTCGTATGACTCAGAAAGAGAAGCTTGGTCAGATGACTCAGATCGAACGCAGCGTTGCCACTCCAGAAGTCATCAGAGATCTCTGCATAGGAAGTGTGCTTAGTGGTGGAGGAAGCAAGCCGTTTGACAAAGCGACATCAGCGGATTGGGCGGACATGATCGACGGGTTACAAAAAGGAGCGCTAGA...

Protein

Download Protein FASTA

609 aa · TkA01G599560|TK1151|PROTEIN

MADMINVVYKNANEPIEARVKDLLSRMTQKEKLGQMTQIERSVATPEVIRDLCIGSVLSGGGSKPFDKATSADWADMIDGLQKGALESRLSIPIFYGSDAVHGNNNVYGTTIFPHNVGLGATRDPDLVERIGAATALETRASGVQYAFAPCVAVCRDPRWGRCYESYSEDTQLVRKMTSLVTGLQGKPPLDHPYGYPYVAGRNNVMASAKHYVGDGGTDKGKNEGNTIIDYENLEKIHMLPYEDCISKGVCTIMASYSSW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G599560`
TK1151 ID	TkA01G599560
OH-1004 ID	LXL04_000611
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	95.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA01G599560`
Location	Chr01:150996185-150999768 (+)
Description	Similar to gluA: Lysosomal beta glucosidase
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_000611` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0009251 glucan catabolic process Biological Process GO:0031222 arabinan catabolic process Biological Process GO:0042742 defense response to bacterium Biological Process GO:0045493 xylan catabolic process Biological Process GO:0085030 symbiotic process benefiting host Biological Process GO:2000899 xyloglucan catabolic process Biological Process GO:0005764 lysosome Cellular Component GO:0008422 beta-glucosidase activity Molecular Function GO:0009044 xylan 1,4-beta-xylosidase activity Molecular Function GO:0015926 glucosidase activity Molecular Function GO:0046556 alpha-L-arabinofuranosidase activity Molecular Function
KEGG gene cross-reference	ddi:DDB_G0292810 ecj:JW2120 eco:b2132 ecoc:C3026_11955 stm:STM2166 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.739

Rank 1 · TkA01G599560 · TK1151

Nucleus0.295

Rank 2 · TkA01G599560 · TK1151

Mitochondrion0.074

Rank 3 · TkA01G599560 · TK1151

Peroxisome0.064

Rank 4 · TkA01G599560 · TK1151

Cell membrane0.061

Rank 5 · TkA01G599560 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00933Glyco_hydro_330-356 aa

PF01915Glyco_hydro_3_C393-604 aa

PF01053Cys_Met_Meta_PP448-482 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G599560	`PF00933`	Glyco_hydro_3	30	356	2.3e-77	261.3
TkA01G599560	`PF01915`	Glyco_hydro_3_C	393	604	1.9e-36	126.7
TkA01G599560	`PF01053`	Cys_Met_Meta_PP	448	482	0.11	11.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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