TkA01G599150 | RubberDandelionOmics

Gene overview

TkA01G599150

Reference: TK1151 Chr: Chr01 Coordinates: 150918977-150920354 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1046 bp · TkA01G599150|TK1151|cDNA

TTTACTTCAACGTCCAAAAACGCCAAAAATAACAGCTTCAAAAATCTCTCCGTCACAAAATCGCTGCAACGTCAATGGCTTGCAGCTCGATCGCCATGGATAGAAGAGCACTTCCGATATCTCTGCACTCTATCCCTAAGCGCCAGCGTCCGCCGGACACTTTGGTTTCCAGAAACTCCGGCTCGAATACGAACTCAAAAACTTCACTTCAGAGTTAGGGTTCAGTTCCTGTCTGGTTCGTATGTTCATGTTCATCTGAA...

CDS

Download CDS FASTA

558 bp · TkA01G599150|TK1151|CDS

TTTACTTCAACGTCCAAAAACGCCAAAAATAACAGCTTCAAAAATCTCTCCGTCACAAAATCGCTGCAACGTCAATGGCTTGCAGCTCGATCGCCATGGATAGAAGAGCACTTCCGATATCTCTGCACTCTATCCCTAAGCGCCAGCGTCCGCCGGACACTTTGGTTTCCAGAAACTCCGGCTCGAATACGAACTCAAAAACTTCACTTCAGAGTTAGGGTTCAGTTCCTGTCTGGTTCGTATGTTCATGTTCATCTGAA...

Protein

Download Protein FASTA

185 aa · TkA01G599150|TK1151|PROTEIN

FTSTSKNAKNNSFKNLSVTKSLQRQWLAARSPWIEEHFRYLCTLSLSASVRRTLWFPETPARIRTQKLHFRVRVQFLSGSYVHVHLNSSCGRNQLWKVRSDVKSDPYELSQSAPESFKFKEKLGVGAMTKDDDGDEFVDNALPWWEEFPKRWTIVILCFSAFLLCNMDRVNMSIAILPMSSEFIH

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G599150`
TK1151 ID	TkA01G599150
OH-1004 ID	LXL04_000615
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 63.243 / OH-1004 21.828 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G599150

Location Chr01:150918977-150920354 (+)

Description Similar to ANTR1: Sodium-dependent phosphate transport protein 1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g29650`	Specific for inorganic phosphate transport across the thylakoid membrane in a sodium dependent manner.	Arabidopsis ANTR1 is a thylakoid Na+-dependent phosphate transporter: functional characterization in Escherichia coli.2008 · DOI: 10.1074/jbc.m709371200
`At4g00370`	Inorganic phosphate and probable anion transporter.	AtPHT4;4 is a chloroplast-localized ascorbate transporter in Arabidopsis.2015 · DOI: 10.1038/ncomms6928
`At5g20380`	Inorganic phosphate and probable anion transporter.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0570400`	Probable anion transporter.	No verified direct reference in this release
`Os01g0279700`	Probable anion transporter.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000615 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006811 monoatomic ion transport Biological Process

GO:0006814 sodium ion transport Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0009624 response to nematode Biological Process

GO:0010028 xanthophyll cycle Biological Process

GO:0015882 L-ascorbic acid transmembrane transport Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009536 plastid Cellular Component

GO:0009579 thylakoid Cellular Component

GO:0009706 chloroplast inner membrane Cellular Component

KEGG gene cross-reference

ath:AT2G29650

ath:AT2G38060

ath:AT4G00370

dosa:Os01g0279700

dosa:Os09g0570400

osa:4326905

osa:4347913

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.961

Rank 1 · TkA01G599150 · TK1151

Nucleus0.044

Rank 2 · TkA01G599150 · TK1151

Mitochondrion0.026

Rank 3 · TkA01G599150 · TK1151

Cytoplasm0.017

Rank 4 · TkA01G599150 · TK1151

Cell membrane0.013

Rank 5 · TkA01G599150 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O82390`	Arabidopsis thaliana	sp\|O82390\|ANTR1_ARATH Sodium-dependent phosphate transport protein 1, chloroplastic	90.500%	Swiss-Prot	Low
`Q8GX78`	Arabidopsis thaliana	sp\|Q8GX78\|ANTR2_ARATH Ascorbate transporter, chloroplastic	76.100%	Swiss-Prot	Low
`Q3E9A0`	Arabidopsis thaliana	sp\|Q3E9A0\|ANTR6_ARATH Probable anion transporter 6, chloroplastic	48.800%	Swiss-Prot	Low
`Q652N5`	Oryza sativa subsp. japonica	sp\|Q652N5\|PHT44_ORYSJ Probable anion transporter 4, chloroplastic	37.300%	Swiss-Prot	Medium
`Q9SDI4`	Oryza sativa subsp. japonica	sp\|Q9SDI4\|PHT41_ORYSJ Probable anion transporter 1, chloroplastic	89.200%	Swiss-Prot	Low

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