TkA01G592820 | RubberDandelionOmics

Gene overview

TkA01G592820

Reference: TK1151 Chr: Chr01 Coordinates: 149207267-149207737 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

471 bp · TkA01G592820|TK1151|cDNA

ATGGAAGTAAACAACAAGAACATTGTGCATGACTTATACAAGGCATTGGCTGCCCGTGACTTCATCAGGGTGCAATGTCTCCTAGCTCCAGATATTGATTGGTGGTTCCATGGCCCACCCAATCATAAATACAACCTTATGCACTTGCTCACTGGAAGTTGTGTTTTAGACGACAATATGGACTATTTTAAACCTGTCGCTATTCATGGTTTTGGGTCGATGGTGGTTGCTGAGGGCTACCATCTTCATGGGAACCGGAA...

CDS

Download CDS FASTA

471 bp · TkA01G592820|TK1151|CDS

ATGGAAGTAAACAACAAGAACATTGTGCATGACTTATACAAGGCATTGGCTGCCCGTGACTTCATCAGGGTGCAATGTCTCCTAGCTCCAGATATTGATTGGTGGTTCCATGGCCCACCCAATCATAAATACAACCTTATGCACTTGCTCACTGGAAGTTGTGTTTTAGACGACAATATGGACTATTTTAAACCTGTCGCTATTCATGGTTTTGGGTCGATGGTGGTTGCTGAGGGCTACCATCTTCATGGGAACCGGAA...

Protein

Download Protein FASTA

156 aa · TkA01G592820|TK1151|PROTEIN

MEVNNKNIVHDLYKALAARDFIRVQCLLAPDIDWWFHGPPNHKYNLMHLLTGSCVLDDNMDYFKPVAIHGFGSMVVAEGYHLHGNRKTCWVHAWTVENGTIITRVREYLNTSLTVFSFRKSDNAYNLVSPCYPKCKNVWQSELADNASVPHLLLVI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G592820`
TK1151 ID	TkA01G592820
OH-1004 ID	LXL04_000709
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G592820

Location Chr01:149207267-149207737 (-)

Description Similar to WUN1: Wound-induced protein 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g10985`	Senescence associated gene 20.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000709 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002238 response to molecule of fungal origin Biological Process

GO:0009620 response to fungus Biological Process

GO:0009624 response to nematode Biological Process

GO:0010150 leaf senescence Biological Process

GO:0010193 response to ozone Biological Process

KEGG gene cross-reference

ath:AT3G10985

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.574

Rank 1 · TkA01G592820 · TK1151

Nucleus0.381

Rank 2 · TkA01G592820 · TK1151

Cell membrane0.087

Rank 3 · TkA01G592820 · TK1151

Mitochondrion0.077

Rank 4 · TkA01G592820 · TK1151

Endoplasmic reticulum0.074

Rank 5 · TkA01G592820 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12680SnoaL_29-100 aa

PF07107WI1247-156 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G592820	`PF12680`	SnoaL_2	9	100	0.026	15.8
TkA01G592820	`PF07107`	WI12	47	156	7.3e-23	81.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q94AK6`	Arabidopsis thaliana	sp\|Q94AK6\|SAG20_ARATH Senescence associated gene 20	39.100%	Swiss-Prot	Medium

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