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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G591230
Reference: TK1151 Chr: Chr01 Coordinates: 148826926-148830870 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3620 bp · TkA01G591230|TK1151|cDNA

TGAAAAGTACATATTTTCACTATAAAATCTCAGCTATATTGTGACCCTTTCTATATCCTCTTAAACTTCTTCTTGACCGATCTCCTCCTGTCTCCTCCGCCTAGCTAGAACTACCACGGTCGACCACCACCTGAACCTAATTTCACCATCATTTAACGAGCCCAACGCTCTGGCCATCACCCACCTGACATGCATTAACATATCCACTGTCACCTATATCAAAAGAGGATGTCTTCTTCTGGGGTAAACCTTGAAAGGTA...

CDS

Download CDS FASTA

1980 bp · TkA01G591230|TK1151|CDS

ATGTCTTCTTCTGGGGTAAACCTTGAAAGGTATCTAATTCCACTCGATGAGATCATCCGTGCCACCGAAAACTTCAGTCAGGAAAGATATGTCGGCGGTGGTGGATTTGGTGCTGTCTACAAAGGACAACTCTCTAAACGCTGGCAAAACCACACAGTTGCTGTCAAACGGCTAGATGCAGACAGCCATCAAGGAGATCGCGAGTTCCGCAACGAGCTTGAGGTTATTTCCAGTTTCCACCATGAAAACATCATCGCTTT...

Protein

Download Protein FASTA

659 aa · TkA01G591230|TK1151|PROTEIN

MSSSGVNLERYLIPLDEIIRATENFSQERYVGGGGFGAVYKGQLSKRWQNHTVAVKRLDADSHQGDREFRNELEVISSFHHENIIAFIGYCDEGGEMIIVYEYASNESLDHHLQHPNKIRCITWAQRLEICIGVARGIHYLHSGLGEKKRVIHRDIKSANILLDGNMVPKICDFGLSKLRTRNQQDTRFYTKVAGTQFYLDPTYLESSILQKESDIYSFGVVLFEILSGMLVYRERRIGDERQSLMNIVRRNHGMELDKV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G591230
TK1151 IDTkA01G591230
OH-1004 IDLXL04_000723
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G591230
LocationChr01:148826926-148830870 (+)
DescriptionSimilar to PUB13: U-box domain-containing protein 13
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g46290 Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner.
Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana.2009 · DOI: 10.1073/pnas.0812346106
At5g59700 Probable receptor-like protein kinase At5g59700. No verified direct reference in this release
At2g39360 Probable receptor-like protein kinase At2g39360. No verified direct reference in this release
At5g39000 Putative receptor-like protein kinase At5g39000. No verified direct reference in this release
At5g61350 Probable receptor-like protein kinase At5g61350. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000723 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006952 defense response Biological Process
GO:0007166 cell surface receptor signaling pathway Biological Process
GO:0009741 response to brassinosteroid Biological Process
GO:0009826 unidimensional cell growth Biological Process
GO:0009908 flower development Biological Process
GO:0010183 pollen tube guidance Biological Process
GO:0010483 pollen tube reception Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0031348 negative regulation of defense response Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0043069 negative regulation of programmed cell death Biological Process
GO:0048586 regulation of long-day photoperiodism, flowering Biological Process
KEGG gene cross-reference
ath:AT2G28830
ath:AT3G46290
ath:AT3G46510
dosa:Os12g0570000
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.441
Rank 1 · TkA01G591230 · TK1151
Cytoplasm0.430
Rank 2 · TkA01G591230 · TK1151
Nucleus0.283
Rank 3 · TkA01G591230 · TK1151
Endoplasmic reticulum0.041
Rank 4 · TkA01G591230 · TK1151
Golgi apparatus0.039
Rank 5 · TkA01G591230 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase26-300 aa
PF07714PK_Tyr_Ser-Thr27-302 aa
PF25904Tmrp11_N41-119 aa
PF12330Haspin_kinase153-197 aa
PF08998Epsilon_antitox285-313 aa
PF11698V-ATPase_H_C321-391 aa
PF24768ARM_ARMC5322-500 aa
PF25598ARM_PUB324-578 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G591230PF00069Pkinase263004.5e-47161.4
TkA01G591230PF07714PK_Tyr_Ser-Thr273021.7e-45156.0
TkA01G591230PF25904Tmrp11_N411190.0613.6
TkA01G591230PF12330Haspin_kinase1531970.0812.7
TkA01G591230PF08998Epsilon_antitox2853130.1713.0
TkA01G591230PF11698V-ATPase_H_C3213910.1712.8
TkA01G591230PF24768ARM_ARMC53225002.2e-1764.1
TkA01G591230PF25598ARM_PUB3245783.4e-2486.5
TkA01G591230PF13513HEAT_EZ3243403.49.0
TkA01G591230PF13646HEAT_23253917.7e-0523.6
TkA01G591230PF00069Pkinase3353604.5e-47161.4
TkA01G591230PF04826Arm_23454290.02414.9
TkA01G591230PF00514Arm3533932.7e-2588.2
TkA01G591230PF13513HEAT_EZ3623883.49.0
TkA01G591230PF02985HEAT3663910.002818.5
TkA01G591230PF00514Arm3954332.7e-2588.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LX66Arabidopsis thalianasp|Q9LX66|HERK_ARATH Receptor-like protein kinase HERK 142.800%Swiss-ProtMedium
Q9FN92Arabidopsis thalianasp|Q9FN92|Y5597_ARATH Probable receptor-like protein kinase At5g5970043.500%Swiss-ProtLow
O80623Arabidopsis thalianasp|O80623|Y2393_ARATH Probable receptor-like protein kinase At2g3936041.900%Swiss-ProtLow
Q9FID8Arabidopsis thalianasp|Q9FID8|Y5900_ARATH Putative receptor-like protein kinase At5g3900043.400%Swiss-ProtLow
Q9FLJ8Arabidopsis thalianasp|Q9FLJ8|Y5613_ARATH Probable receptor-like protein kinase At5g6135043.000%Swiss-ProtLow

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