TkA01G589510 | RubberDandelionOmics

Gene overview

TkA01G589510

Reference: TK1151 Chr: Chr01 Coordinates: 148296784-148299832 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2102 bp · TkA01G589510|TK1151|cDNA

AAAGCGCGTGCCTTAACTCGAATTGAACTTGGCAATAGGAAAAACACAAAGCAGAATTTGTGTCAGAACCCTTCCTACTTTCCCCTTCTATCTCTATATGGATTGGATGCTTCCCCGCGAAACCCTCTCTACCTTCCACATACCCAAAATGGCTTGATCGGACTCTACAATTCGCAGCCGTCGATCGCCGTCTCCAACCGCCATCACCACCTACTGCTTACACGGCTAATCCGCCATGGAAGGTACCGATTCCGTTGCTA...

CDS

Download CDS FASTA

1554 bp · TkA01G589510|TK1151|CDS

ATGGAAGGTACCGATTCCGTTGCTACACTCTTGGAGTCCACAAACTCCAAAATCCAACAACTTCAGAAAGCATTTGCTGAGCTAGAAAGTCACCGAGCTGTAACTCTCAACCTGAAATGGAAACAAATTGAAGAACATTTCCATGGCCTAGAGAAGTCCTTGAAGAGGCGCTTCACTGAACTAGAAGATCAAGAAAAGGAATTTGAAAACAAAACAATTCAAGCACAACAAGTTCTGGAAAAGCGTAGAGCTGCCGTTAC...

Protein

Download Protein FASTA

517 aa · TkA01G589510|TK1151|PROTEIN

MEGTDSVATLLESTNSKIQQLQKAFAELESHRAVTLNLKWKQIEEHFHGLEKSLKRRFTELEDQEKEFENKTIQAQQVLEKRRAAVTAKEEASLIRLQEKRDVAVTAIANTISKHKTSHESEEHATAPMVDQKQPDMKTLFDNGDVKLLTNPQLAKLCEEMDAGGLHKFISDNRKNLASIKEEIPIALKASSNPGGFVLDSLSGFYIPEGSNLDGKKDANLLGLRRTCIMLMECLSILLVNLDANTVSKVISEDVKNRAK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G589510`
TK1151 ID	TkA01G589510
OH-1004 ID	LXL04_000766
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G589510

Location Chr01:148296784-148299832 (-)

Description Similar to FRL3: FRIGIDA-like protein 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g48385`	FRIGIDA-like protein 3.	No verified direct reference in this release
`UniProt: A0SWL0`	Involved in flowering time regulation.	No verified direct reference in this release
`At1g31814`	Inactive FRIGIDA-like 2 protein.	FRIGIDA-related genes are required for the winter-annual habit in Arabidopsis.2004 · DOI: 10.1073/pnas.0306778101 FRIGIDA LIKE 2 is a functional allele in Landsberg erecta and compensates for a nonsense allele of FRIGIDA LIKE 1.2006 · DOI: 10.1104/pp.106.085571
`At5g16320`	Required for FRI-mediated up-regulation of FLC transcripts, but not redundant with FRI and only partially redundant with FRL2.	FRIGIDA-related genes are required for the winter-annual habit in Arabidopsis.2004 · DOI: 10.1073/pnas.0306778101 FRIGIDA LIKE 2 is a functional allele in Landsberg erecta and compensates for a nonsense allele of FRIGIDA LIKE 1.2006 · DOI: 10.1104/pp.106.085571 The FRIGIDA complex activates transcription of FLC, a strong flowering repressor in Arabidopsis, by recruiting chromatin modification factors.2011 · DOI: 10.1105/tpc.110.075911

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000766 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009908 flower development Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0030154 cell differentiation Biological Process

GO:0005634 nucleus Cellular Component

GO:0009536 plastid Cellular Component

KEGG gene cross-reference

ath:AT1G31814

ath:AT3G22440

ath:AT4G14900

ath:AT5G48385

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.879

Rank 1 · TkA01G589510 · TK1151

Cytoplasm0.163

Rank 2 · TkA01G589510 · TK1151

Cell membrane0.064

Rank 3 · TkA01G589510 · TK1151

Endoplasmic reticulum0.036

Rank 4 · TkA01G589510 · TK1151

Plastid0.018

Rank 5 · TkA01G589510 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24481CT398_CC1-33 aa

PF27291AF_14576-62 aa

PF17419MauJ13-87 aa

PF20421DHR-2_Lobe_C14-63 aa

PF07899Frigida20-70 aa

PF27291AF_145735-80 aa

PF18822CdvA36-75 aa

PF13921Myb_DNA-bind_637-69 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G589510	`PF24481`	CT398_CC	1	33	0.02	15.4
TkA01G589510	`PF27291`	AF_1457	6	62	3.4	8.7
TkA01G589510	`PF17419`	MauJ	13	87	0.21	13.0
TkA01G589510	`PF20421`	DHR-2_Lobe_C	14	63	0.032	14.9
TkA01G589510	`PF07899`	Frigida	20	70	9.3e-107	357.3
TkA01G589510	`PF27291`	AF_1457	35	80	3.4	8.7
TkA01G589510	`PF18822`	CdvA	36	75	0.23	12.1
TkA01G589510	`PF13921`	Myb_DNA-bind_6	37	69	0.37	11.7
TkA01G589510	`PF24481`	CT398_CC	41	119	0.02	15.4
TkA01G589510	`PF13921`	Myb_DNA-bind_6	87	109	0.37	11.7
TkA01G589510	`PF07899`	Frigida	89	120	9.3e-107	357.3
TkA01G589510	`PF07899`	Frigida	151	442	9.3e-107	357.3
TkA01G589510	`PF27291`	AF_1457	229	263	3.4	8.7
TkA01G589510	`PF20421`	DHR-2_Lobe_C	327	343	0.032	14.9
TkA01G589510	`PF18822`	CdvA	392	447	0.23	12.1
TkA01G589510	`PF24481`	CT398_CC	422	433	0.02	15.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q67ZB3`	Arabidopsis thaliana	sp\|Q67ZB3\|FRL3_ARATH FRIGIDA-like protein 3	50.400%	Swiss-Prot	High
`A0SWL0`	Arabidopsis thaliana	sp\|A0SWL0\|FRL2A_ARATH FRIGIDA-like protein 2	32.000%	Swiss-Prot	Medium
`Q9C6S2`	Arabidopsis thaliana	sp\|Q9C6S2\|FRL2I_ARATH Inactive FRIGIDA-like protein 2	32.000%	Swiss-Prot	Medium
`Q9FFF1`	Arabidopsis thaliana	sp\|Q9FFF1\|FRL1A_ARATH FRIGIDA-like protein 1	31.100%	Swiss-Prot	Medium

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