TkA01G589080 | RubberDandelionOmics

Gene overview

TkA01G589080

Reference: TK1151 Chr: Chr01 Coordinates: 148194430-148197787 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1992 bp · TkA01G589080|TK1151|cDNA

AAAAAAAGGCGCTACCTTAGTGTGAACAGGGAAAGTTTCCCAAGTTGGTGGCTCTATTGAAACTCACTCTTCCTCCACTGTCCCCCTCTTATCCTTCACTTGCCTTGTAAGCGAACCACTGGCAAATTTCACTCGATTCTATGCTCCCATTTTATATTCCGCCTTCACTACCACAAAAACCTCAAGGGAGATTCAAGAATCTTTCCCCCTTTTCTCTTTCTTGAAACCCCCAAATTAAATTTCCATAATATGATCACGAT...

CDS

Download CDS FASTA

1506 bp · TkA01G589080|TK1151|CDS

ATGATCACGATAATGAACTCAATCCACTTAATATTAGTGATTTATCTCTCATTTAACATTTTCTTGGCACAATCCGCCCCTCAAAGTGCCATAGTTAGTCAACTTCCTGGTTTCGATGGCGCTCTACCATCCAAACACTATGCTGGGTATGTTACGGTAGATGAAAACCATGGCAAGAAATTGTTTTATTACTATGTGCTTTCAGAAAGAAACCCTTCTAAGGATCCGGTGGTTCTTTGGCTTAATGGTGGACCTGGTTG...

Protein

Download Protein FASTA

501 aa · TkA01G589080|TK1151|PROTEIN

MITIMNSIHLILVIYLSFNIFLAQSAPQSAIVSQLPGFDGALPSKHYAGYVTVDENHGKKLFYYYVLSERNPSKDPVVLWLNGGPGCSSFDGFVYEHGPFNFEKTGSMPKLHLNPYTWTKVSNVIYLDSPAGVGLSYSGNQSDYITRDTTTALDSHKFLLEWFKLYPEFLSNPFFIAGESYAGVYVPMLSYEVMKGLDAGDIPTLNFKGYIVGNGVTDEVYDGNALVPFAHGMGLISDELYQEVTNECQGNYYSPVNNDC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G589080`
TK1151 ID	TkA01G589080
OH-1004 ID	LXL04_000775
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G589080

Location Chr01:148194430-148197787 (+)

Description Similar to CBP1: Serine carboxypeptidase 1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g12910`	Probable carboxypeptidase.	No verified direct reference in this release
`At3g25420`	Probable carboxypeptidase.	No verified direct reference in this release
`At2g22920`	Probable carboxypeptidase.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os12g0257000`	Serine carboxypeptidase 1.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000775 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0019748 secondary metabolic process Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0004185 serine-type carboxypeptidase activity Molecular Function

GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups Molecular Function

GO:0016752 sinapoyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT3G10450

ath:AT3G25420

ath:AT4G12910

dosa:Os12g0257000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.558

Rank 1 · TkA01G589080 · TK1151

Extracellular0.193

Rank 2 · TkA01G589080 · TK1151

Endoplasmic reticulum0.092

Rank 3 · TkA01G589080 · TK1151

Cytoplasm0.091

Rank 4 · TkA01G589080 · TK1151

Cell membrane0.069

Rank 5 · TkA01G589080 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00450Peptidase_S1036-498 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G589080	`PF00450`	Peptidase_S10	36	498	3.1e-140	469.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8L7B2`	Arabidopsis thaliana	sp\|Q8L7B2\|SCP20_ARATH Serine carboxypeptidase-like 20	64.600%	Swiss-Prot	High
`Q9LSV8`	Arabidopsis thaliana	sp\|Q9LSV8\|SCP21_ARATH Serine carboxypeptidase-like 21	63.100%	Swiss-Prot	High
`O81009`	Arabidopsis thaliana	sp\|O81009\|SCP12_ARATH Serine carboxypeptidase-like 12	39.500%	Swiss-Prot	Medium
`P37890`	Oryza sativa subsp. japonica	sp\|P37890\|CBP1_ORYSJ Serine carboxypeptidase 1	68.700%	Swiss-Prot	High

JBrowse

View in Genome Browser

Gene Card