TkA01G581180 | RubberDandelionOmics

Gene overview

TkA01G581180

Reference: TK1151 Chr: Chr01 Coordinates: 146235595-146238687 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1187 bp · TkA01G581180|TK1151|cDNA

ACTATACATATAGCCTCAAAGTTGCTGTTCATCTCGACGCCAGCCCTAACTTTTATACATACAAATCTTTCCCCCCATTTCTCTCGCTCTCGCTCGCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTATTTTTCTTCATCTCTCTCGATATTCAAAATGTTGAAGAATTCACGCGGTTGGGTTTTATGGTAATAAAACCAGAGCATCACTGAATTGAGAATTAAGTAATGGGGAAATACATGAGGAAAGCTAATTTAACCG...

CDS

Download CDS FASTA

408 bp · TkA01G581180|TK1151|CDS

ATGATTTCTTCAGGCGTGTCTGGTTCGGTCGGGTCGGGTTCTTTGGACACTGAATTTAAAGCAGGTGAAGAAACAGAGGAGTCTTGTTATTTTGGAGAAAATAATATCGATTTTGACGGCAGAGAAAGGAGCACTCGAGAAAGCACTCCTTGTAGCTTGAGAAACGATACATATGACATTTATGCCCATGGGTCTAGTTCTAGCACGCGATCCATGAATCTAGAACCTTCTAGAACATCGCGGAATTTAATCACAAAAAA...

Protein

Download Protein FASTA

135 aa · TkA01G581180|TK1151|PROTEIN

MISSGVSGSVGSGSLDTEFKAGEETEESCYFGENNIDFDGRERSTRESTPCSLRNDTYDIYAHGSSSSTRSMNLEPSRTSRNLITKNMPFTQEIEEFFARHDQEQQRRFADKYNFDIAKEKPIGGRYEWVQVQSQ

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G581180`
TK1151 ID	TkA01G581180
OH-1004 ID	LXL04_000842
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 60.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G581180

Location Chr01:146235595-146238687 (+)

Description Similar to KRP3: Cyclin-dependent kinase inhibitor 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g48820`	Binds and inhibits CYCD2-1/CDKA-1 complex kinase activity.	No verified direct reference in this release
`At2g32710`	Binds and inhibits CYCD2-1/CDKA-1 complex kinase activity.	No verified direct reference in this release
`At3g24810`	Inhibits CYCD2-1/CDKA-1 complex kinase activity without interaction with the complex.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0137800`	Cyclin-dependent kinase inhibitor 5.	No verified direct reference in this release
`Os09g0459900`	Cyclin-dependent kinase inhibitor 6.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000842 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0032877 positive regulation of DNA endoreduplication Biological Process

GO:0045740 positive regulation of DNA replication Biological Process

GO:0045786 negative regulation of cell cycle Biological Process

GO:0051726 regulation of cell cycle Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity Molecular Function

GO:0031490 chromatin DNA binding Molecular Function

KEGG gene cross-reference

ath:AT2G32710

ath:AT3G24810

ath:AT5G48820

dosa:Os03g0137800

dosa:Os10g0471700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.724

Rank 1 · TkA01G581180 · TK1151

Cytoplasm0.347

Rank 2 · TkA01G581180 · TK1151

Cell membrane0.043

Rank 3 · TkA01G581180 · TK1151

Mitochondrion0.037

Rank 4 · TkA01G581180 · TK1151

Endoplasmic reticulum0.021

Rank 5 · TkA01G581180 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02234CDI14-24 aa

PF02234CDI35-47 aa

PF08608Wyosine_form81-102 aa

PF02234CDI89-132 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G581180	`PF02234`	CDI	14	24	1.2e-16	61.3
TkA01G581180	`PF02234`	CDI	35	47	1.2e-16	61.3
TkA01G581180	`PF08608`	Wyosine_form	81	102	0.16	13.0
TkA01G581180	`PF02234`	CDI	89	132	1.2e-16	61.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FKB5`	Arabidopsis thaliana	sp\|Q9FKB5\|KRP3_ARATH Cyclin-dependent kinase inhibitor 3	50.500%	Swiss-Prot	High
`Q8GYJ3`	Arabidopsis thaliana	sp\|Q8GYJ3\|KRP4_ARATH Cyclin-dependent kinase inhibitor 4	37.600%	Swiss-Prot	Medium
`Q9LRY0`	Arabidopsis thaliana	sp\|Q9LRY0\|KRP5_ARATH Cyclin-dependent kinase inhibitor 5	51.900%	Swiss-Prot	Low
`Q283L0`	Oryza sativa subsp. japonica	sp\|Q283L0\|KRP5_ORYSJ Cyclin-dependent kinase inhibitor 5	38.700%	Swiss-Prot	Medium
`Q67J15`	Oryza sativa subsp. japonica	sp\|Q67J15\|KRP6_ORYSJ Cyclin-dependent kinase inhibitor 6	51.100%	Swiss-Prot	Low

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