TkA01G579790 | RubberDandelionOmics

Gene overview

TkA01G579790

Reference: TK1151 Chr: Chr01 Coordinates: 145889196-145890286 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

686 bp · TkA01G579790|TK1151|cDNA

TATTCCCTAATTTTACCTTTTCCTTTTCAAAATCAGTTTTTCCCACAAAGGCTGTTAACAGAAGAGGTTCTTCTGTAGGTGCGGGGAAGGATGAGCTACCTACTGAGAACATTGACGAAGAAGGAAGAGGTCGATTCCATGATCAGAGACACCATCGATAAGCTACTCGTCCTTCGCTTCGGTCGATCTTCCGACTCCGTCTGTCTTCAACTCGATGATATCCTTTCAAAATCAGAACGAGAGCTATCGAAATTCGCAAG...

CDS

Download CDS FASTA

456 bp · TkA01G579790|TK1151|CDS

ATGAGCTACCTACTGAGAACATTGACGAAGAAGGAAGAGGTCGATTCCATGATCAGAGACACCATCGATAAGCTACTCGTCCTTCGCTTCGGTCGATCTTCCGACTCCGTCTGTCTTCAACTCGATGATATCCTTTCAAAATCAGAACGAGAGCTATCGAAATTCGCAAGTATAGCATTAGTTGATGTTGATTCGGAGGAAATTCAAGTTTACATCAAGTATTTTGACATCACACTCATCCCTTCCACGGTTTTCTTCTT...

Protein

Download Protein FASTA

151 aa · TkA01G579790|TK1151|PROTEIN

MSYLLRTLTKKEEVDSMIRDTIDKLLVLRFGRSSDSVCLQLDDILSKSERELSKFASIALVDVDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGSADHTKWVGAFHRKQDFIDVVEEIFRGAMKGKLIVKCPLPPERIPKFQLLYKDV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G579790`
TK1151 ID	TkA01G579790
OH-1004 ID	LXL04_000864
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G579790

Location Chr01:145889196-145890286 (-)

Description Similar to TXNL4B: Thioredoxin-like protein 4B

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g08290`	Thioredoxin-like protein YLS8.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000864 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000244 spliceosomal tri-snRNP complex assembly Biological Process

GO:0000388 spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) Biological Process

GO:0000398 mRNA splicing, via spliceosome Biological Process

GO:0008284 positive regulation of cell population proliferation Biological Process

GO:0045292 mRNA cis splicing, via spliceosome Biological Process

GO:0051301 cell division Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005681 spliceosomal complex Cellular Component

GO:0005682 U5 snRNP Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005794 Golgi apparatus Cellular Component

KEGG gene cross-reference

ath:AT5G08290

hsa:54957

mmu:234723

mmu:27366

spo:2539369

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.509

Rank 1 · TkA01G579790 · TK1151

Nucleus0.407

Rank 2 · TkA01G579790 · TK1151

Lysosome / Vacuole0.094

Rank 3 · TkA01G579790 · TK1151

Endoplasmic reticulum0.090

Rank 4 · TkA01G579790 · TK1151

Cell membrane0.081

Rank 5 · TkA01G579790 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02966DIM14-137 aa

PF00085Thioredoxin10-101 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G579790	`PF02966`	DIM1	4	137	1.9e-49	167.6
TkA01G579790	`PF00085`	Thioredoxin	10	101	0.0034	18.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FE62`	Arabidopsis thaliana	sp\|Q9FE62\|YLS8_ARATH Thioredoxin-like protein YLS8	37.200%	Swiss-Prot	Medium

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