TkA01G576830 | RubberDandelionOmics

Gene overview

TkA01G576830

Reference: TK1151 Chr: Chr01 Coordinates: 145020293-145023828 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1740 bp · TkA01G576830|TK1151|cDNA

ATTCCTTCCTATCTTTTGTATGGCATTTACTCATTTAGCCTCCTTTTTGAAATCGTTATAATTACGCGGGTTTTGTATCACTCGGTTTCTAAGAACCCTAGAAACCAACGACTGATCTTGACATATTCGTCCGATGGCTATGGCGGGTTTGTATAGGAGAGTTCTTCCATCACCTCCTGCTATTGATTTCGCTTCTTCCGAAGGGAAGCTATTGTTCATAGAAGCAATACAAGGTGGAACCATGGAAGGATTTTATAAAT...

CDS

Download CDS FASTA

1416 bp · TkA01G576830|TK1151|CDS

ATGGCTATGGCGGGTTTGTATAGGAGAGTTCTTCCATCACCTCCTGCTATTGATTTCGCTTCTTCCGAAGGGAAGCTATTGTTCATAGAAGCAATACAAGGTGGAACCATGGAAGGATTTTATAAATTAATCTCCTACTTTCAGACACAATCAGAACCTGCATATTGTGGATTAGCTACCCTAGCCATGGTCCTCAATGCCCTCTCTATCGATCCAGGAAGAAAATGGAAAGGCCCCTGGAGATGGTTTGATGAATCCAT...

Protein

Download Protein FASTA

471 aa · TkA01G576830|TK1151|PROTEIN

MAMAGLYRRVLPSPPAIDFASSEGKLLFIEAIQGGTMEGFYKLISYFQTQSEPAYCGLATLAMVLNALSIDPGRKWKGPWRWFDESMLDCCEPLEKVKAEGISFGKVVCLAHCAGAKVEAFRTNQTNVDEFRRHVIACSSSDDCHLISSYNRATFKQTGSGHFSPIGGYHAGRDMVLVLDVARFKYPPHWVPLVLLWEAMNTIDESSGFRRGFMLISRLDRSPALLYTLSCKHESWIKIADYLIEDVPKLLSCNDVKDVK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G576830`
TK1151 ID	TkA01G576830
OH-1004 ID	LXL04_000913
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G576830

Location Chr01:145020293-145023828 (+)

Description Similar to PCS1: Glutathione gamma-glutamylcysteinyltransferase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g44070`	Involved in the synthesis of phytochelatins (PC) and homophytochelatins (hPC), the heavy-metal-binding peptides of plants.	No verified direct reference in this release
`At1g03980`	Involved in the synthesis of phytochelatins (PC) and homophytochelatins (hPC), the heavy-metal-binding peptides of plants.	Arabidopsis thaliana expresses a second functional phytochelatin synthase.2001 · DOI: 10.1016/s0014-5793(01)02976-3 Expression of Arabidopsis phytochelatin synthase 2 is too low to complement an AtPCS1-defective Cad1-3 mutant.2005 · DOI: 10.1016/s1016-8478(23)13140-2 Function of phytochelatin synthase in catabolism of glutathione-conjugates.2007 · DOI: 10.1111/j.1365-313x.2006.02993.x

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000913 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006950 response to stress Biological Process

GO:0010273 detoxification of copper ion Biological Process

GO:0015700 arsenite transport Biological Process

GO:0042344 indole glucosinolate catabolic process Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0046685 response to arsenic-containing substance Biological Process

GO:0046686 response to cadmium ion Biological Process

GO:0046938 phytochelatin biosynthetic process Biological Process

GO:0052544 defense response by callose deposition in cell wall Biological Process

GO:0098849 cellular detoxification of cadmium ion Biological Process

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT1G03980

ath:AT5G44070

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.511

Rank 1 · TkA01G576830 · TK1151

Nucleus0.335

Rank 2 · TkA01G576830 · TK1151

Cell membrane0.129

Rank 3 · TkA01G576830 · TK1151

Mitochondrion0.093

Rank 4 · TkA01G576830 · TK1151

Golgi apparatus0.092

Rank 5 · TkA01G576830 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05023Phytochelatin7-213 aa

PF13529Peptidase_C39_247-72 aa

PF03412Peptidase_C3948-68 aa

PF09328Phytochelatin_C85-143 aa

PF03412Peptidase_C3995-145 aa

PF13529Peptidase_C39_2154-182 aa

PF29659F26C11_3_mid198-211 aa

PF09328Phytochelatin_C231-329 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G576830	`PF05023`	Phytochelatin	7	213	2.3e-89	298.9
TkA01G576830	`PF13529`	Peptidase_C39_2	47	72	0.011	16.8
TkA01G576830	`PF03412`	Peptidase_C39	48	68	0.017	15.7
TkA01G576830	`PF09328`	Phytochelatin_C	85	143	1e-71	242.1
TkA01G576830	`PF03412`	Peptidase_C39	95	145	0.017	15.7
TkA01G576830	`PF13529`	Peptidase_C39_2	154	182	0.011	16.8
TkA01G576830	`PF29659`	F26C11_3_mid	198	211	0.15	12.8
TkA01G576830	`PF09328`	Phytochelatin_C	231	329	1e-71	242.1
TkA01G576830	`PF18167`	Sa_NUDIX	270	323	0.19	12.2
TkA01G576830	`PF09328`	Phytochelatin_C	335	451	1e-71	242.1
TkA01G576830	`PF29659`	F26C11_3_mid	335	358	0.15	12.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9S7Z3`	Arabidopsis thaliana	sp\|Q9S7Z3\|PCS1_ARATH Glutathione gamma-glutamylcysteinyltransferase 1	60.400%	Swiss-Prot	High
`Q9ZWB7`	Arabidopsis thaliana	sp\|Q9ZWB7\|PCS2_ARATH Glutathione gamma-glutamylcysteinyltransferase 2	59.400%	Swiss-Prot	High

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