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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G576320
Reference: TK1151 Chr: Chr01 Coordinates: 144909211-144912370 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2043 bp · TkA01G576320|TK1151|cDNA

CTCCTCACATATCCATCGTTCCTTGTTCACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCCCTCGTTCTTCTTCCTTTTCACGTTTCCTGAATCTTTACACACATACACACATTACATTCATATAAAAAATACCGTTTTTTATAATTCCGTTTCTCTCTCATCGCATTTTTCTATTTGCATCGCAAATCAATCGTATCGTTTTCGAAAAAAACCTCGTCTTTATTCCCTTCTCTGATTCCTCAATCCTCGT...

CDS

Download CDS FASTA

840 bp · TkA01G576320|TK1151|CDS

ATGGATCATATTGTTGGTGGAAAGTTTAAGCTTGGAAGGAAAATTGGCAGCGGATCATTTGGGGAACTTTTTTTAGGTGTTAATATTCAAACCGGAGAAGAAGTAGCTGTTAAACTGGAAGGCGTCAAGACAAGGCATCCTCAACTTCATTATGAGTCAAAAATTTATAGGCTTCTCCAAGGAGGAACGGGAGTACCAAACCTTAAATGGTTTGGTGTTGAGGGCGAGTACAATATCATGGTCATTGACCTTCTTGGACC...

Protein

Download Protein FASTA

279 aa · TkA01G576320|TK1151|PROTEIN

MDHIVGGKFKLGRKIGSGSFGELFLGVNIQTGEEVAVKLEGVKTRHPQLHYESKIYRLLQGGTGVPNLKWFGVEGEYNIMVIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLLNRVEYMHARGFLHRDLKPDNFLMGLGRKANQVYAIDFGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVSYVFYKRKPSVARIESGNKKQKYDKISEKKMLTPIEVLCKSYPSEFISYFHYCRSLRF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G576320
TK1151 IDTkA01G576320
OH-1004 IDLXL04_000920
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)93.800
Protein coverage (%)TK1151 98.925 / OH-1004 62.162
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G576320
LocationChr01:144909211-144912370 (+)
DescriptionSimilar to CKL9: Casein kinase 1-like protein 9
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g23340 Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates. No verified direct reference in this release
At5g44100 Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates. No verified direct reference in this release
At1g03930 Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates. No verified direct reference in this release
At4g14340 Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0622100 Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.
Roles of OsCKI1, a rice casein kinase I, in root development and plant hormone sensitivity.2003 · DOI: 10.1046/j.1365-313x.2003.01866.x
Rice LTG1 is involved in adaptive growth and fitness under low ambient temperature.2014 · DOI: 10.1111/tpj.12487
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000920 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0001558 regulation of cell growth Biological Process
GO:0006897 endocytosis Biological Process
GO:0007165 signal transduction Biological Process
GO:0009409 response to cold Biological Process
GO:0009741 response to brassinosteroid Biological Process
GO:0009826 unidimensional cell growth Biological Process
GO:0009850 auxin metabolic process Biological Process
GO:0016310 phosphorylation Biological Process
GO:0043622 cortical microtubule organization Biological Process
GO:0046777 protein autophosphorylation Biological Process
GO:0048364 root development Biological Process
GO:0051510 regulation of unidimensional cell growth Biological Process
KEGG gene cross-reference
ath:AT1G03930
ath:AT3G23340
ath:AT4G14340
ath:AT4G28540
dosa:Os02g0622100
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.561
Rank 1 · TkA01G576320 · TK1151
Nucleus0.410
Rank 2 · TkA01G576320 · TK1151
Mitochondrion0.140
Rank 3 · TkA01G576320 · TK1151
Cell membrane0.069
Rank 4 · TkA01G576320 · TK1151
Endoplasmic reticulum0.048
Rank 5 · TkA01G576320 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase9-228 aa
PF07714PK_Tyr_Ser-Thr10-202 aa
PF03109ABC115-39 aa
PF03109ABC186-158 aa
PF27674DUF836188-129 aa
PF01636APH98-153 aa
PF06293Kdo108-153 aa
PF17667Pkinase_fungal120-202 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G576320PF00069Pkinase92284.1e-2486.1
TkA01G576320PF07714PK_Tyr_Ser-Thr102026.1e-1349.4
TkA01G576320PF03109ABC115395.7e-0523.1
TkA01G576320PF03109ABC1861585.7e-0523.1
TkA01G576320PF27674DUF8361881290.1911.8
TkA01G576320PF01636APH981530.001419.2
TkA01G576320PF06293Kdo1081530.008216.3
TkA01G576320PF17667Pkinase_fungal1202027.3e-0625.7
TkA01G576320PF27674DUF83611621810.1911.8
TkA01G576320PF27674DUF83612202540.1911.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LW62Arabidopsis thalianasp|Q9LW62|CKL10_ARATH Casein kinase 1-like protein 1083.700%Swiss-ProtHigh
Q9FFH8Arabidopsis thalianasp|Q9FFH8|CKL7_ARATH Casein kinase 1-like protein 783.000%Swiss-ProtHigh
Q9ZWB3Arabidopsis thalianasp|Q9ZWB3|CKL9_ARATH Casein kinase 1-like protein 983.000%Swiss-ProtHigh
Q39050Arabidopsis thalianasp|Q39050|CKL11_ARATH Casein kinase 1-like protein 1182.600%Swiss-ProtHigh
Q6K9N1Oryza sativa subsp. japonicasp|Q6K9N1|CKI1_ORYSJ Casein kinase 185.100%Swiss-ProtHigh

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