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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G570400
Reference: TK1151 Chr: Chr01 Coordinates: 143560634-143564376 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1779 bp · TkA01G570400|TK1151|cDNA

GATGAATCCCTATTAGGCTATTATCTCCTCGACGATAAAAGCCACTCGATTCTCTACAACAGTGCAGCTTGCAGCCGTCTCTATCCCGTTCAATTGCGAAATCATCGATAATCGTTCTCACCGTAAACCCTTTTTCTAGAAGATGGCAGAGGATAACAATAACATCAGTGAACATGAGATAGAGGCTATGCCAGACAACTCTGTTCCAGTTGAAATTCAAGATCCTGAGAATGACCAGGGTGATGATGTAGAAACTCAAG...

CDS

Download CDS FASTA

1422 bp · TkA01G570400|TK1151|CDS

ATGGCAGAGGATAACAATAACATCAGTGAACATGAGATAGAGGCTATGCCAGACAACTCTGTTCCAGTTGAAATTCAAGATCCTGAGAATGACCAGGGTGATGATGTAGAAACTCAAGAGAACGAGGAAGAACAAGTTGGTGCTGATGTGGCAAGCACAGCTGTACAGGGCACTGCTGCAGAAGGTGTTGTGGAAAAGAAATGGCCAGGGTGGCCTGGAGAGAATGTTTTCAGGTTGTTGGTCCCTGTACAAAAAGTTGG...

Protein

Download Protein FASTA

473 aa · TkA01G570400|TK1151|PROTEIN

MAEDNNNISEHEIEAMPDNSVPVEIQDPENDQGDDVETQENEEEQVGADVASTAVQGTAAEGVVEKKWPGWPGENVFRLLVPVQKVGGIIGRKGEYIKKTCEETRARIKILDGPPGTTERTVLISAKEEPEASIPPAIDGLLKVHQRVIDADNDPTRVQPGGPATISTRLLVAGTQGGSLIGKQGATIKTIQDSSNCKIRVIGENLPIFALPDDSVVEIQGEVTGVHKAVELVATHLRKFLVDRSVVGIFEMQMQTPNPR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G570400
TK1151 IDTkA01G570400
OH-1004 IDLXL04_020552
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)66.500
Protein coverage (%)TK1151 47.569 / OH-1004 43.908
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G570400
LocationChr01:143560634-143564376 (+)
DescriptionSimilar to FLK: Flowering locus K homology domain
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g04610 Positively regulates flowering by repressing FLC expression and post-transcriptional modification. No verified direct reference in this release
At4g26000 Regulates vegetative and gynoecium development. No verified direct reference in this release
At4g18375 KH domain-containing protein At4g18375. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_020552 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006396 RNA processing Biological Process
GO:0009299 mRNA transcription Biological Process
GO:0009911 positive regulation of flower development Biological Process
GO:0048367 shoot system development Biological Process
GO:0048467 gynoecium development Biological Process
GO:0048577 negative regulation of short-day photoperiodism, flowering Biological Process
GO:0048579 negative regulation of long-day photoperiodism, flowering Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT3G04610
ath:AT4G26000
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.806
Rank 1 · TkA01G570400 · TK1151
Cytoplasm0.411
Rank 2 · TkA01G570400 · TK1151
Cell membrane0.027
Rank 3 · TkA01G570400 · TK1151
Endoplasmic reticulum0.022
Rank 4 · TkA01G570400 · TK1151
Mitochondrion0.020
Rank 5 · TkA01G570400 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13083KH_KhpA-B32-42 aa
PF13083KH_KhpA-B74-98 aa
PF26594KH_NusA_2nd76-98 aa
PF00013KH_177-129 aa
PF13184KH_NusA_1st83-110 aa
PF07650KH_284-114 aa
PF22675KH-I_KHDC4-BBP86-110 aa
PF22891KH_PNO1_2nd86-112 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G570400PF13083KH_KhpA-B32420.007816.8
TkA01G570400PF13083KH_KhpA-B74980.007816.8
TkA01G570400PF26594KH_NusA_2nd76980.311.6
TkA01G570400PF00013KH_1771291.1e-41141.1
TkA01G570400PF13184KH_NusA_1st831100.9910.4
TkA01G570400PF07650KH_2841143.3e-0834.0
TkA01G570400PF22675KH-I_KHDC4-BBP861105e-0936.6
TkA01G570400PF22891KH_PNO1_2nd861120.0009919.7
TkA01G570400PF13083KH_KhpA-B1651920.007816.8
TkA01G570400PF00013KH_11682331.1e-41141.1
TkA01G570400PF07650KH_21682023.3e-0834.0
TkA01G570400PF26594KH_NusA_2nd1702030.311.6
TkA01G570400PF22891KH_PNO1_2nd1782080.0009919.7
TkA01G570400PF13184KH_NusA_1st1782030.9910.4
TkA01G570400PF22675KH-I_KHDC4-BBP1792045e-0936.6
TkA01G570400PF21800KH_KRR1_2nd1802060.1512.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SR13Arabidopsis thalianasp|Q9SR13|FLK_ARATH Flowering locus K homology domain55.200%Swiss-ProtHigh
Q9SZH4Arabidopsis thalianasp|Q9SZH4|PEP_ARATH RNA-binding KH domain-containing protein PEPPER46.600%Swiss-ProtMedium
P58223Arabidopsis thalianasp|P58223|Y4837_ARATH KH domain-containing protein At4g1837531.700%Swiss-ProtLow

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