RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G569340
Reference: TK1151 Chr: Chr01 Coordinates: 143303311-143306685 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1846 bp · TkA01G569340|TK1151|cDNA

TCGGTCCATGCTATTGTAGTCTCTCTCTCTACTGTTATTTCTCTCTCTCTCTCTCTAAACTCCCGATTTCGATTTATAAACAGATGATCCAGCAACGCCTCTCGTCCAAATCCATAACGAAATGACAAATCCACGTCGTTTAATCTCAAATTATTCGTACTAATCTCCTCAATCGCACAATCCCGTATCCCCATCTCCCTAGATCGAAGGTACTACGTGATTTTTCGCGAGTGTTTCTAAAAAGGGATACCAGGTGTTTG...

CDS

Download CDS FASTA

1230 bp · TkA01G569340|TK1151|CDS

ATGTCGAGTAATCAGGTGGTCAAAGCACGAAGAAAGGAGTTAGCGAGATGCATGACATGCCCTATCTGCCACAAGCTTTTCAGACATGCCACCACTATCTCTGAGTGTCTTCACACGTTCTGCAGGAAATGTATACGTAAGAAGATCTCACAAGAAGAACTTGATTGTTGTCCAATATGCAATATTGATCTAGGATGTGTGCCTTTGGACAAGCTGAGGCCAGACCATAATTTGCAAGATGTGAGAGCTAAAATCTTCCC...

Protein

Download Protein FASTA

409 aa · TkA01G569340|TK1151|PROTEIN

MSSNQVVKARRKELARCMTCPICHKLFRHATTISECLHTFCRKCIRKKISQEELDCCPICNIDLGCVPLDKLRPDHNLQDVRAKIFPYKRRRVKAPEVSVTLPLRRKERSLSSLVVSTPRVSPQTTMTGKRSKVTPRKKSRGLTFSIEKSLKKEAEEEEEEEEEDSMDESSSSHETSNKINRSSKQNSLTSHEEKERGEGKVDWKPLNDLVEAANRSKSSKLTCVVKPEPSSYTVKGEGQKGKDQLHRPKLEDDKDRHEA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G569340
TK1151 IDTkA01G569340
OH-1004 IDLXL04_000983
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G569340
LocationChr01:143303311-143306685 (+)
DescriptionSimilar to DRIP2: E3 ubiquitin protein ligase DRIP2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g30580 E3 ubiquitin-protein ligase that acts as a negative regulator of the response to water stress.
Arabidopsis DREB2A-interacting proteins function as RING E3 ligases and negatively regulate plant drought stress-responsive gene expression.2008 · DOI: 10.1105/tpc.107.057380
At1g06770 E3 ubiquitin-protein ligase that acts as a negative regulator of the response to water stress.
Arabidopsis DREB2A-interacting proteins function as RING E3 ligases and negatively regulate plant drought stress-responsive gene expression.2008 · DOI: 10.1105/tpc.107.057380
At3g23060 Probable E3 ubiquitin protein ligase DRIPH. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000983 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process
GO:0006338 chromatin remodeling Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0051865 protein autoubiquitination Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0031519 PcG protein complex Cellular Component
GO:0035102 PRC1 complex Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G06770
ath:AT2G30580
ath:AT3G23060
xla:734550
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.964
Rank 1 · TkA01G569340 · TK1151
Cytoplasm0.113
Rank 2 · TkA01G569340 · TK1151
Cell membrane0.022
Rank 3 · TkA01G569340 · TK1151
Mitochondrion0.013
Rank 4 · TkA01G569340 · TK1151
Endoplasmic reticulum0.010
Rank 5 · TkA01G569340 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23145Zf_2nd_IFT1218-25 aa
PF14835zf-RING_614-60 aa
PF11789zf-Nse18-61 aa
PF13639zf-RING_219-61 aa
PF16685zf-RING_1019-61 aa
PF12678zf-rbx119-61 aa
PF14447Prok-RING_419-25 aa
PF13923zf-C3HC4_220-60 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G569340PF23145Zf_2nd_IFT1218251.39.4
TkA01G569340PF14835zf-RING_614601.19.9
TkA01G569340PF11789zf-Nse18610.4811.0
TkA01G569340PF13639zf-RING_219610.001119.9
TkA01G569340PF16685zf-RING_1019611.010.2
TkA01G569340PF12678zf-rbx119613.28.8
TkA01G569340PF14447Prok-RING_419256.37.5
TkA01G569340PF13923zf-C3HC4_220605.7e-0729.9
TkA01G569340PF13445zf-RING_UBOX20556.1e-0730.0
TkA01G569340PF00097zf-C3HC420603.8e-0627.4
TkA01G569340PF14634zf-RING_520610.0001922.0
TkA01G569340PF15227zf-C3HC4_420600.004417.8
TkA01G569340PF14447Prok-RING_420616.37.5
TkA01G569340PF23145Zf_2nd_IFT12134601.39.4
TkA01G569340PF13445zf-RING_UBOX57616.1e-0730.0
TkA01G569340PF14851FAM1761371982.48.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q94AY3Arabidopsis thalianasp|Q94AY3|DRIP2_ARATH E3 ubiquitin protein ligase DRIP244.200%Swiss-ProtMedium
Q9M9Y4Arabidopsis thalianasp|Q9M9Y4|DRIP1_ARATH E3 ubiquitin protein ligase DRIP141.100%Swiss-ProtMedium
Q9LS86Arabidopsis thalianasp|Q9LS86|DRIPH_ARATH Probable E3 ubiquitin protein ligase DRIPH45.900%Swiss-ProtLow

JBrowse

View in Genome Browser