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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G566180
Reference: TK1151 Chr: Chr01 Coordinates: 142492935-142500916 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

6570 bp · TkA01G566180|TK1151|cDNA

TTTTGGCAAATTTTGTTATTGAAAATGAGAAATAAGTCAAAAATGAAAGAGAGTTTGTCTCATTTTGGGTTTTGTGTGTATTGGGCCCTCCGTGTTACTTTATTATTTTCCTTTCCATAAGCCGACGCCCGACAGCTCCACTTCTAAAACACAAACCCACGCCAGCGTCTACACAACAAAGAATCAAAAAAGGTGCACACAATAGTTAGTTCTAGAAAGTAACGTAAACAGATCAAGCTGGTATGGGTTGAAATCGAGGT...

CDS

Download CDS FASTA

5865 bp · TkA01G566180|TK1151|CDS

ATGGCTTCTTTGTCAAAGACCGACTCCAGGCGCATGTATTCATGGTGGTGGAACAGCCACATTAGCCCCAAAAATTCCAAATGGCTTCAAGAGAATCTTACAGATGTGGATATAAAAGTAAAAGCAATGATAAAACTCATTGAAGAAGACGCAGATTCCTTTGCAAGAAGGGCAGAAATGTACTACAAAAAGCGACCCGAACTCATGAAACTAGTGGAAGAGATGTACAGAGCTTATCGGGCCTTAGCAGAAAGATATGT...

Protein

Download Protein FASTA

1954 aa · TkA01G566180|TK1151|PROTEIN

MASLSKTDSRRMYSWWWNSHISPKNSKWLQENLTDVDIKVKAMIKLIEEDADSFARRAEMYYKKRPELMKLVEEMYRAYRALAERYVHATGALRQAHKTMSEAFPNQVPTMSDDQSPNSPYDGDPQCQTPDSRTTFDLSDKDEESDGSVGTTTARRSLKFNDSDDSKEILLLKEALSKLEEEKEKGLKQYMESLERLAKLESEIIHAQEASSQLVDRASKAEAEAQSLKDAIQRIKAETGDNLELYHRGLEKLANLERMI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G566180
TK1151 IDTkA01G566180
OH-1004 IDLXL04_001025
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.600
Protein coverage (%)TK1151 100.000 / OH-1004 97.651
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G566180
LocationChr01:142492935-142500916 (+)
DescriptionSimilar to NET1D: Protein NETWORKED 1D
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g03080 Plant-specific actin binding protein. No verified direct reference in this release
At4g14760 Plant-specific actin binding protein. No verified direct reference in this release
At3g22790 Plant-specific actin binding protein.
A superfamily of actin-binding proteins at the actin-membrane nexus of higher plants.2012 · DOI: 10.1016/j.cub.2012.06.041
At4g02710 Plant-specific actin binding protein. No verified direct reference in this release
At2g22560 Plant-specific actin binding protein. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001025 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005634 nucleus Cellular Component
GO:0005856 cytoskeleton Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0051015 actin filament binding Molecular Function
KEGG gene cross-reference
ath:AT1G03080
ath:AT3G22790
ath:AT4G14760
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.513
Rank 1 · TkA01G566180 · TK1151
Golgi apparatus0.236
Rank 2 · TkA01G566180 · TK1151
Cell membrane0.186
Rank 3 · TkA01G566180 · TK1151
Nucleus0.175
Rank 4 · TkA01G566180 · TK1151
Endoplasmic reticulum0.092
Rank 5 · TkA01G566180 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07765KIP114-86 aa
PF17940TetR_C_3150-95 aa
PF20492ERM_helical68-83 aa
PF08614ATG1670-238 aa
PF24161CCDC39155-273 aa
PF20492ERM_helical171-282 aa
PF24423OVT1174-231 aa
PF23649FKBP15176-287 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G566180PF07765KIP114862.4e-35121.2
TkA01G566180PF17940TetR_C_3150950.1113.5
TkA01G566180PF20492ERM_helical68830.00717.1
TkA01G566180PF08614ATG16702380.01416.3
TkA01G566180PF24161CCDC391552730.0007718.2
TkA01G566180PF20492ERM_helical1712820.00717.1
TkA01G566180PF24423OVT11742310.01216.7
TkA01G566180PF23649FKBP151762870.005917.0
TkA01G566180PF26666DUF82211882350.005717.5
TkA01G566180PF08614ATG162113750.01416.3
TkA01G566180PF20492ERM_helical2423360.00717.1
TkA01G566180PF24423OVT12523110.01216.7
TkA01G566180PF26666DUF82212622940.005717.5
TkA01G566180PF23649FKBP152623460.005917.0
TkA01G566180PF26666DUF82212963320.005717.5
TkA01G566180PF07765KIP13093372.4e-35121.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4HZB5Arabidopsis thalianasp|F4HZB5|NET1D_ARATH Protein NETWORKED 1D38.700%Swiss-ProtMedium
F4JIF4Arabidopsis thalianasp|F4JIF4|NET1B_ARATH Protein NETWORKED 1B35.800%Swiss-ProtMedium
Q9LUI2Arabidopsis thalianasp|Q9LUI2|NET1A_ARATH Protein NETWORKED 1A35.300%Swiss-ProtMedium
Q9ZQX8Arabidopsis thalianasp|Q9ZQX8|NET1C_ARATH Protein NETWORKED 1C44.300%Swiss-ProtLow
F4IJK1Arabidopsis thalianasp|F4IJK1|NET2D_ARATH Protein NETWORKED 2D60.800%Swiss-ProtLow

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