TkA01G563700 | RubberDandelionOmics

Gene overview

TkA01G563700

Reference: TK1151 Chr: Chr01 Coordinates: 141718208-141729281 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1172 bp · TkA01G563700|TK1151|cDNA

GGCATTGAGAATATCAATTAAACAGGCTAGCAATTTACTTTGCTCAGGGGCCTCTGCCTTTGGACATTGGAAGACTAGCAACAGGATTTGGATCGGGAGTGTTTTCCTATGTGGTACCTGTGTTCATAGCTGAAATAGCACCCAAGCAATTACGAGGCTTGTTAACAGCAGCAAATCAGCTCTTAATTGTTACTGGAGTTTCAGTTTCCTTTGTAATAGGAACAGTCCTACATTGGCGAACCATGGCTTTGGCAGGATTG...

CDS

Download CDS FASTA

1419 bp · TkA01G563700|TK1151|CDS

ATGTCTATTGAAAACGATATGGAGGAAACGGAAAACACAGTTCAAGATGAAATCAGAGCTCCATTGGTGGTCCCAGATGAAAAAAGCAAGGAAAACAATTCCATGGTTTACCTAAGCACTTTTGTTGCAGTCTGTGGTTCTTTTGCATTTGGATCATGTGCAGGTTATTCCTCTCCAACTCAATCTGCCATCAGGGAGGATCTTAATTTGTCATTAGCAGAATATTCACTGTTTGGCTCCATATTGACATTTGGTGCAAT...

Protein

Download Protein FASTA

472 aa · TkA01G563700|TK1151|PROTEIN

MSIENDMEETENTVQDEIRAPLVVPDEKSKENNSMVYLSTFVAVCGSFAFGSCAGYSSPTQSAIREDLNLSLAEYSLFGSILTFGAMIGAIASGPMADFFGRKGALRISTAFCTAGWLAIYFAQGPLTLDIGRLATGFGMGVFSYVVPVFIAEIAPKQLRGLLTAANQLLIVTGVSVSFVIGTVLHWRTMALAGLIPCAVLLLGLFIIPESPRWLAKIGQEEEFDCALRKLRGQDIDVSEEAAEIRDYIETLRRLPQARL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G563700`
TK1151 ID	TkA01G563700
OH-1004 ID	LXL04_025913
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	57.800
Protein coverage (%)	TK1151 98.729 / OH-1004 98.144 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G563700

Location Chr01:141718208-141729281 (-)

Description Similar to At5g18840: Sugar transporter ERD6-like 16

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g48020`	Sugar transporter.	No verified direct reference in this release
`At5g18840`	Sugar transporter.	No verified direct reference in this release
`At3g05150`	Sugar transporter.	No verified direct reference in this release
`At1g54730`	Sugar transporter.	No verified direct reference in this release
`At1g08920`	Sugar transporter.	Functional analysis of an Arabidopsis thaliana abiotic stress-inducible facilitated diffusion transporter for monosaccharides.2010 · DOI: 10.1074/jbc.m109.054288

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025913 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006829 zinc ion transport Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0015749 monosaccharide transmembrane transport Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G08920

ath:AT1G54730

ath:AT2G48020

ath:AT3G05150

ath:AT5G18840

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.563

Rank 1 · TkA01G563700 · TK1151

Lysosome / Vacuole0.180

Rank 2 · TkA01G563700 · TK1151

Cytoplasm0.131

Rank 3 · TkA01G563700 · TK1151

Endoplasmic reticulum0.080

Rank 4 · TkA01G563700 · TK1151

Mitochondrion0.060

Rank 5 · TkA01G563700 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00083Sugar_tr41-467 aa

PF07690MFS_145-417 aa

PF02151UVR240-254 aa

PF07690MFS_1293-462 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G563700	`PF00083`	Sugar_tr	41	467	1.4e-91	308.4
TkA01G563700	`PF07690`	MFS_1	45	417	1.5e-26	93.9
TkA01G563700	`PF02151`	UVR	240	254	0.53	10.9
TkA01G563700	`PF07690`	MFS_1	293	462	1.5e-26	93.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P93051`	Arabidopsis thaliana	sp\|P93051\|ERDL7_ARATH Sugar transporter ERD6-like 7	73.300%	Swiss-Prot	High
`Q8LBI9`	Arabidopsis thaliana	sp\|Q8LBI9\|EDL16_ARATH Sugar transporter ERD6-like 16	62.700%	Swiss-Prot	High
`Q0WQ63`	Arabidopsis thaliana	sp\|Q0WQ63\|ERDL8_ARATH Sugar transporter ERD6-like 8	56.300%	Swiss-Prot	High
`Q3ECP7`	Arabidopsis thaliana	sp\|Q3ECP7\|ERDL5_ARATH Sugar transporter ERD6-like 5	57.200%	Swiss-Prot	High
`Q94KE0`	Arabidopsis thaliana	sp\|Q94KE0\|ESL1_ARATH Sugar transporter ESL1	52.800%	Swiss-Prot	High

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