TkA01G560920 | RubberDandelionOmics

Gene overview

TkA01G560920

Reference: TK1151 Chr: Chr01 Coordinates: 141051945-141054588 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2289 bp · TkA01G560920|TK1151|cDNA

AAATTAAAATAACAATACTTTTCTGGGTCCCATGTTAAAAAGTTTATTTCGGCCGCCTGCTTTGTCGTCTCTCTCGCCTCCGTCCACCACCGTCGTTCTTTTGTGTTCGACTCCCACCCCTTAAATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGTGTGTGTAACGCTCGAATTCTTTATATCCCCCTTTTTATATCATTCGAGCGCTGCAAAACCCTCTGAAATACGAGGAATTAACTGTGT...

CDS

Download CDS FASTA

1089 bp · TkA01G560920|TK1151|CDS

ATGGCTGGTAGTAACGAAATCAACGCAAATGAAGCCAAGAAAGTCGTTCCACTACACACATGGATTTTAATATCCAACTTTAAGCTAGCTTACAACATGCTCCGGCGACCTGACGGGACATTCAACCGGGAGCTCGCCGAGTTTCTTGACCGGAAAGTGGTTGCGAATACGGTTCCGGTGGATGGTGTTTACTCATTTGACGTGGTTGACCGTGCGACTAGTCTTCTCAACCGGATTTACAGATGCGCTCCACCGGAAAA...

Protein

Download Protein FASTA

362 aa · TkA01G560920|TK1151|PROTEIN

MAGSNEINANEAKKVVPLHTWILISNFKLAYNMLRRPDGTFNRELAEFLDRKVVANTVPVDGVYSFDVVDRATSLLNRIYRCAPPENESTRQLGAGTIELEKPLSTTEIVPVILFFHGGSFTHSSANSAIYDTFCRRLTGLIQGVVVSVNYRRSPEHRYPCAYEDGWEALKWVHSRSWLLSGKDSKVHVYLAGDSSGGNIAHHVAHRAATSGLKVLGNILLHPLFGGEERTESEKKLDGKYFVKLQDRDWYWRAFLPEGE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G560920`
TK1151 ID	TkA01G560920
OH-1004 ID	LXL04_001099
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 99.725 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G560920

Location Chr01:141051945-141054588 (-)

Description Similar to GID1B: Gibberellin receptor GID1B

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g63010`	Functions as a soluble gibberellin (GA) receptor.	Identification and characterization of Arabidopsis gibberellin receptors.2006 · DOI: 10.1111/j.1365-313x.2006.02748.x Genetic characterization and functional analysis of the GID1 gibberellin receptors in Arabidopsis.2006 · DOI: 10.1105/tpc.106.047415 Multiple loss-of-function of Arabidopsis gibberellin receptor AtGID1s completely shuts down a gibberellin signal.2007 · DOI: 10.1111/j.1365-313x.2007.03098.x
`At3g05120`	Functions as a soluble gibberellin (GA) receptor.	Identification and characterization of Arabidopsis gibberellin receptors.2006 · DOI: 10.1111/j.1365-313x.2006.02748.x Genetic characterization and functional analysis of the GID1 gibberellin receptors in Arabidopsis.2006 · DOI: 10.1105/tpc.106.047415 Multiple loss-of-function of Arabidopsis gibberellin receptor AtGID1s completely shuts down a gibberellin signal.2007 · DOI: 10.1111/j.1365-313x.2007.03098.x
`At5g27320`	Functions as a soluble gibberellin (GA) receptor.	Identification and characterization of Arabidopsis gibberellin receptors.2006 · DOI: 10.1111/j.1365-313x.2006.02748.x Genetic characterization and functional analysis of the GID1 gibberellin receptors in Arabidopsis.2006 · DOI: 10.1105/tpc.106.047415 Multiple loss-of-function of Arabidopsis gibberellin receptor AtGID1s completely shuts down a gibberellin signal.2007 · DOI: 10.1111/j.1365-313x.2007.03098.x
`At5g23530`	Carboxylesterase acting on esters with varying acyl chain length.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0407500`	Functions as a soluble gibberellin (GA) receptor.	GIBBERELLIN INSENSITIVE DWARF1 encodes a soluble receptor for gibberellin.2005 · DOI: 10.1038/nature04028

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001099 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009739 response to gibberellin Biological Process

GO:0009740 gibberellic acid mediated signaling pathway Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0009939 positive regulation of gibberellic acid mediated signaling pathway Biological Process

GO:0010476 gibberellin mediated signaling pathway Biological Process

GO:0010629 negative regulation of gene expression Biological Process

GO:0048444 floral organ morphogenesis Biological Process

GO:0048530 fruit morphogenesis Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:1905516 positive regulation of fertilization Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT3G05120

ath:AT3G63010

ath:AT5G23530

ath:AT5G27320

dosa:Os05g0407500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.542

Rank 1 · TkA01G560920 · TK1151

Nucleus0.233

Rank 2 · TkA01G560920 · TK1151

Endoplasmic reticulum0.122

Rank 3 · TkA01G560920 · TK1151

Cell membrane0.091

Rank 4 · TkA01G560920 · TK1151

Plastid0.078

Rank 5 · TkA01G560920 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20434BD-FAE102-208 aa

PF00135COesterase108-209 aa

PF07859Abhydrolase_3113-326 aa

PF20408Abhydrolase_11183-220 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G560920	`PF20434`	BD-FAE	102	208	1.1e-10	42.1
TkA01G560920	`PF00135`	COesterase	108	209	1.2e-05	25.2
TkA01G560920	`PF07859`	Abhydrolase_3	113	326	2.3e-58	198.2
TkA01G560920	`PF20408`	Abhydrolase_11	183	220	0.087	13.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LYC1`	Arabidopsis thaliana	sp\|Q9LYC1\|GID1B_ARATH Gibberellin receptor GID1B	75.100%	Swiss-Prot	High
`Q9MAA7`	Arabidopsis thaliana	sp\|Q9MAA7\|GID1A_ARATH Gibberellin receptor GID1A	70.500%	Swiss-Prot	High
`Q940G6`	Arabidopsis thaliana	sp\|Q940G6\|GID1C_ARATH Gibberellin receptor GID1C	70.500%	Swiss-Prot	High
`Q9LT10`	Arabidopsis thaliana	sp\|Q9LT10\|CXE18_ARATH Probable carboxylesterase 18	36.400%	Swiss-Prot	Medium
`Q6L545`	Oryza sativa subsp. japonica	sp\|Q6L545\|GID1_ORYSJ Gibberellin receptor GID1	60.700%	Swiss-Prot	High

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