TkA01G559170 | RubberDandelionOmics

Gene overview

TkA01G559170

Reference: TK1151 Chr: Chr01 Coordinates: 140659294-140663226 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2316 bp · TkA01G559170|TK1151|cDNA

CGAAAAGTGACCAACAGTGCTGTCTCTACATTTTTTGACTTTTTATTAATCAAATCGAAAAACCACTCAAATAAAGCATAATTACCCTCCCTTTAATCCTGCATGCATTCCTCTCGCTTTTGCCACACACAAACACACACACACACACATATGCCTCAACTCACCTAAACAAAGTGGGGGATTTATTTTCGTTGTTGAAGGAATCAAGAATGGGTGTTGTTACGATGAGTGAATTGAAGCCCAGCATCTCTGGAAAACGA...

CDS

Download CDS FASTA

1887 bp · TkA01G559170|TK1151|CDS

ATGGGTGTTGTTACGATGAGTGAATTGAAGCCCAGCATCTCTGGAAAACGATCCTTTCGACCCAGTTCCAGTACTCGCCATGTTATCGAATGGCCAATATCCGATGTTTCTAGCGATCTTACAATCGATGTAGGAACAGCAAGTTTTTCACTTCATAAGTTCCCTCTGGTTTCCAAAAGTGGTAGAATCCGGAAGCTTCTAATGGAAGCTAAAGACTCCAAAATTATACGCCTAAATCTTCATAATGTACCAGGCGGATC...

Protein

Download Protein FASTA

628 aa · TkA01G559170|TK1151|PROTEIN

MGVVTMSELKPSISGKRSFRPSSSTRHVIEWPISDVSSDLTIDVGTASFSLHKFPLVSKSGRIRKLLMEAKDSKIIRLNLHNVPGGSEAFELAAKFCYGVNVDINLANVAKLCCISHFLEMTEEFSDRNLETRAETFLKETVLPNIINSISVLHHCENLLPVSEEINLVTRIITAIGNNACKEQLTCGLSKLESNYPSKPVLQSESENWWGKSLTVLSLDFFQRVLTAVKTRGLKQDMIARILMNYAQNSLQGLFLRDPQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G559170`
TK1151 ID	TkA01G559170
OH-1004 ID	LXL04_001126
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G559170

Location Chr01:140659294-140663226 (+)

Description Similar to At1g03010: BTB/POZ domain-containing protein At1g03010

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g03010`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At2g47860`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At5g48800`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At3g08570`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At5g67385`	Acts as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (Probable).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001126 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009846 pollen germination Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0009904 chloroplast accumulation movement Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT1G03010

ath:AT2G47860

ath:AT3G08570

ath:AT5G48800

ath:AT5G67385

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.482

Rank 1 · TkA01G559170 · TK1151

Cytoplasm0.404

Rank 2 · TkA01G559170 · TK1151

Cell membrane0.153

Rank 3 · TkA01G559170 · TK1151

Endoplasmic reticulum0.046

Rank 4 · TkA01G559170 · TK1151

Lysosome / Vacuole0.036

Rank 5 · TkA01G559170 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00651BTB38-122 aa

PF03000NPH3129-174 aa

PF03000NPH3208-476 aa

PF30810AFAP_C313-334 aa

PF26052BRE1B541-577 aa

PF30810AFAP_C545-604 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G559170	`PF00651`	BTB	38	122	4.1e-05	24.4
TkA01G559170	`PF03000`	NPH3	129	174	4.3e-87	292.8
TkA01G559170	`PF03000`	NPH3	208	476	4.3e-87	292.8
TkA01G559170	`PF30810`	AFAP_C	313	334	0.15	13.0
TkA01G559170	`PF26052`	BRE1B	541	577	0.044	14.3
TkA01G559170	`PF30810`	AFAP_C	545	604	0.15	13.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SA69`	Arabidopsis thaliana	sp\|Q9SA69\|Y1301_ARATH BTB/POZ domain-containing protein At1g03010	67.700%	Swiss-Prot	High
`O82253`	Arabidopsis thaliana	sp\|O82253\|SETH6_ARATH BTB/POZ domain-containing protein SETH6	60.500%	Swiss-Prot	High
`Q9FKB6`	Arabidopsis thaliana	sp\|Q9FKB6\|Y5880_ARATH BTB/POZ domain-containing protein At5g48800	45.800%	Swiss-Prot	Medium
`Q9C9Z7`	Arabidopsis thaliana	sp\|Q9C9Z7\|Y3857_ARATH BTB/POZ domain-containing protein At3g08570	43.300%	Swiss-Prot	Medium
`Q66GP0`	Arabidopsis thaliana	sp\|Q66GP0\|SR1P1_ARATH BTB/POZ domain-containing protein SR1IP1	43.900%	Swiss-Prot	Medium

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