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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G556150
Reference: TK1151 Chr: Chr01 Coordinates: 139809855-139813804 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2853 bp · TkA01G556150|TK1151|cDNA

CGGCAGTCATGTGGATGACCTTCGAGCAAAAGAGGCGTAGCAGTAACGGAAAAATTTAAAAGCAAATAGGAGAAAAAGAAAGAAAGAGAGAGAAATCGGTAGGAGGGAGAGATCTAAGCGAAACGGGGACTCAACACCATACCCAAAATTGACACAGCGGCTCTCCCTCTCCGATTAGATCGGACCCTCTGTATGCAAATTAATTAGGGTTTATGTTTATTTTCTCGAAATTATAAACAATTTCCCCATATCCTTTGAAT...

CDS

Download CDS FASTA

2070 bp · TkA01G556150|TK1151|CDS

ATGGCTTCAGATCAGATGTTGCCTAATTCGAGCGTTTCATCAAAGAAGCAACAAGCATTGGAAGCTGGGAAGAAGAAGCTTGAGGAGTTCCGTAAGAAGAAAGCAGCAGCCAAAAAAGCTGCATCCAGTAATTCTGCTAATGGAGACTTACATGAAACAAGACCTTCAGTTTCTGATGCTACATCTGATTTAGTTTCAGAAAATAATGAAAAGAAAACACAAGACATTCATGAATCAGAATCCCATTCCATTCATCCTAC...

Protein

Download Protein FASTA

689 aa · TkA01G556150|TK1151|PROTEIN

MASDQMLPNSSVSSKKQQALEAGKKKLEEFRKKKAAAKKAASSNSANGDLHETRPSVSDATSDLVSENNEKKTQDIHESESHSIHPTNANPTTSSNKPSANPIQTYSTNIKIDHDAHAPQEELKNTKLGFNGGYGVVDFEKPKPFHHAEDNSNSNNNNNHSSLNNFSRDDRLKDYTSSFAASSANGSTDRDSIFEVEKSSQEHHFPPVSDRNPNKVFDHHPESSSESISTSFRYDPVPAPVPVPVSVPSTGLPTRRSRPS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G556150
TK1151 IDTkA01G556150
OH-1004 IDLXL04_001190
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.000
Protein coverage (%)TK1151 99.419 / OH-1004 98.569
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G556150
LocationChr01:139809855-139813804 (+)
DescriptionSimilar to BLI: Protein BLISTER
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g23980 Is required for normal leaf, flower and seed development and controls cotyledon and leaf patterning by inhibiting premature differentiation.
A nuclear-localized protein, KOLD SENSITIV-1, affects the expression of cold-responsive genes during prolonged chilling in Arabidopsis.2011 · DOI: 10.1016/j.jplph.2010.07.001

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001190 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0009908 flower development Biological Process
GO:0009965 leaf morphogenesis Biological Process
GO:0010091 trichome branching Biological Process
GO:0040008 regulation of growth Biological Process
GO:0048316 seed development Biological Process
GO:0048826 cotyledon morphogenesis Biological Process
GO:0051781 positive regulation of cell division Biological Process
GO:0005634 nucleus Cellular Component
GO:0005794 Golgi apparatus Cellular Component
KEGG gene cross-reference
ath:AT3G23980
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.434
Rank 1 · TkA01G556150 · TK1151
Cytoplasm0.360
Rank 2 · TkA01G556150 · TK1151
Endoplasmic reticulum0.142
Rank 3 · TkA01G556150 · TK1151
Nucleus0.127
Rank 4 · TkA01G556150 · TK1151
Cell membrane0.119
Rank 5 · TkA01G556150 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16326ABC_tran_CTD13-45 aa
PF18504Csm1_N15-40 aa
PF29729Kebab_C16-35 aa
PF13747DUF416419-30 aa
PF28219Spindly24-46 aa
PF29997SPC25_N26-32 aa
PF30378CEP135_TSGA10_CC26-43 aa
PF18504Csm1_N64-73 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G556150PF16326ABC_tran_CTD13450.1313.2
TkA01G556150PF18504Csm1_N15400.03415.2
TkA01G556150PF29729Kebab_C16357.07.1
TkA01G556150PF13747DUF416419300.03115.4
TkA01G556150PF28219Spindly24460.0009818.8
TkA01G556150PF29997SPC25_N26320.01516.3
TkA01G556150PF30378CEP135_TSGA10_CC26432.86.8
TkA01G556150PF18504Csm1_N64730.03415.2
TkA01G556150PF29997SPC25_N3154000.01516.3
TkA01G556150PF30378CEP135_TSGA10_CC3194632.86.8
TkA01G556150PF16326ABC_tran_CTD3273620.1313.2
TkA01G556150PF13747DUF41643293700.03115.4
TkA01G556150PF19111DUF57983323701.99.5
TkA01G556150PF28219Spindly3364940.0009818.8
TkA01G556150PF29729Kebab_C3384047.07.1
TkA01G556150PF18504Csm1_N3434000.03415.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LIQ9Arabidopsis thalianasp|Q9LIQ9|BLI_ARATH Protein BLISTER60.200%Swiss-ProtMedium

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